Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_D19
(1289 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical pr... 33 0.33
Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical pr... 33 0.58
Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical pr... 31 1.8
U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protei... 30 3.1
AF000298-11|AAM97960.1| 518|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-10|AAM97961.1| 539|Caenorhabditis elegans Prion-like-(... 29 7.1
AF000298-8|AAC48255.2| 524|Caenorhabditis elegans Prion-like-(q... 29 7.1
U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protei... 29 9.5
AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular col... 29 9.5
>U41557-2|AAA83301.1| 309|Caenorhabditis elegans Hypothetical
protein C50F7.5 protein.
Length = 309
Score = 33.5 bits (73), Expect = 0.33
Identities = 28/89 (31%), Positives = 29/89 (32%), Gaps = 5/89 (5%)
Frame = +2
Query: 566 SCGPXPXXXRPXPSX---PGXXXASIXPNTSXPXXXXXVXXRPXSXESXPPXPG--XPSX 730
S GP P PS PG S P+ S P V S PP PG PS
Sbjct: 177 SPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSD 236
Query: 731 XPXEXSXPPSTXXXSXPAXPSXPXPXXXP 817
P S PP P P P P
Sbjct: 237 EP-SPSDPPGPPGPPGPPTRRPPGPPGPP 264
Score = 32.7 bits (71), Expect = 0.58
Identities = 25/87 (28%), Positives = 28/87 (32%), Gaps = 7/87 (8%)
Frame = +2
Query: 566 SCGPXPXXXRPXPSXP---GXXXASIXPNTSXPXXXXXVXXRPXSXESXPPXP----GXP 724
S GP P PS P G S P S P V S PP P G P
Sbjct: 194 SPGPVDPSDEPSPSGPPSPGPVDPSEDPKPSEPPSPGPVDPSDEPSPSDPPGPPGPPGPP 253
Query: 725 SXXPXEXSXPPSTXXXSXPAXPSXPXP 805
+ P PP+ P P+ P
Sbjct: 254 TRRPPGPPGPPTRRPPGPPGPPTRRPP 280
Score = 31.5 bits (68), Expect = 1.3
Identities = 25/84 (29%), Positives = 26/84 (30%), Gaps = 5/84 (5%)
Frame = +2
Query: 581 PXXXRPXPSX---PGXXXASIXPNTSXPXXXXXVXXRPXSXESXPPXPG--XPSXXPXEX 745
P P PS PG S P+ S P V S PP PG PS P
Sbjct: 77 PTSVVPQPSNEPSPGTVAPSDEPSPSGPPSPGPVNPSEDPQPSGPPSPGPVDPSEDPQPS 136
Query: 746 SXPPSTXXXSXPAXPSXPXPXXXP 817
P S P P P P
Sbjct: 137 VEPSEDHQPSGPPSPGPVDPSEDP 160
Score = 29.9 bits (64), Expect = 4.1
Identities = 23/74 (31%), Positives = 24/74 (32%), Gaps = 2/74 (2%)
Frame = +2
Query: 602 PSXPGXXXASIXPNTSXPXXXXXVXXRPXSXESXPPXPG--XPSXXPXEXSXPPSTXXXS 775
P PG S P S V S PP PG PS P + S PPS
Sbjct: 175 PPSPGPVDPSEDPQPSGSSSPGPVDPSDEPSPSGPPSPGPVDPSEDP-KPSEPPSPGPVD 233
Query: 776 XPAXPSXPXPXXXP 817
PS P P
Sbjct: 234 PSDEPSPSDPPGPP 247
>Z95559-1|CAB08999.1| 289|Caenorhabditis elegans Hypothetical
protein Y41E3.2 protein.
Length = 289
Score = 32.7 bits (71), Expect = 0.58
Identities = 25/107 (23%), Positives = 29/107 (27%), Gaps = 1/107 (0%)
Frame = +2
Query: 488 GSPXSXXXXAXPXXAPXTHLSTXXXXSCGPXPXXXRPXPSXPGXXXASIXPNTSXPXXXX 667
G P + P P C P P P PG + P P
Sbjct: 108 GKPGAPGQPGTPGRPPQQPCEPTTPPPCQPCPQGPPGPPGQPGIPGDNGPPGEQGPKGPD 167
Query: 668 XVXXRP-XSXESXPPXPGXPSXXPXEXSXPPSTXXXSXPAXPSXPXP 805
P PP P + P E P + S PA P P P
Sbjct: 168 AAPGEPGPKGPIGPPGPPGQAGAPGE----PGSPAKSEPAVPGPPGP 210
>Z54238-1|CAA90992.2| 281|Caenorhabditis elegans Hypothetical
protein T28C6.1 protein.
Length = 281
Score = 31.1 bits (67), Expect = 1.8
Identities = 31/122 (25%), Positives = 35/122 (28%), Gaps = 1/122 (0%)
Frame = -3
Query: 882 GXGRGGXVSXRXWXGXXXXXXXGXXXGXGXEGXAGXDXXXVEGGXXXSXGXXE-GXPGXG 706
G GRGG W G G G G G GG + G + G G G
Sbjct: 158 GGGRGGSGGQGGWGGSQDGGSQGGWGGQNGGGQGGNQGGG--GGRGGNQGGEQGGWGGQG 215
Query: 705 GXDSXXWGRXXTXXXXSGXEVXGMILAXXXPGXEGXGRXXXGXGPQLXXXXVDKWVXGAX 526
G G G + G PG G G G G W G+
Sbjct: 216 GSQGGSQGGSQGGWGNQGGQQGGGRGGQQGPGGWGGGGRGGGWG---------GWGRGSR 266
Query: 525 WG 520
WG
Sbjct: 267 WG 268
>U39745-4|AAA80446.1| 325|Caenorhabditis elegans Collagen protein
173 protein.
Length = 325
Score = 30.3 bits (65), Expect = 3.1
Identities = 19/76 (25%), Positives = 21/76 (27%), Gaps = 1/76 (1%)
Frame = +2
Query: 575 PXPXXXRPXPSXPGXXXASIXPNTSX-PXXXXXVXXRPXSXESXPPXPGXPSXXPXEXSX 751
P P + P PG P P R E+ G P P E
Sbjct: 189 PGPPGLKGMPGIPGNQGEDAGPGRQGMPGPTGPPGPRGPPGETGDEGEGGPDGIPMEKKS 248
Query: 752 PPSTXXXSXPAXPSXP 799
PP PA P P
Sbjct: 249 PPGPRGPPGPAGPDGP 264
>AF000298-11|AAM97960.1| 518|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform b protein.
Length = 518
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/95 (24%), Positives = 23/95 (24%)
Frame = +2
Query: 521 PXXAPXTHLSTXXXXSCGPXPXXXRPXPSXPGXXXASIXPNTSXPXXXXXVXXRPXSXES 700
P P S S P P P P P S P P S
Sbjct: 237 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 296
Query: 701 XPPXPGXPSXXPXEXSXPPSTXXXSXPAXPSXPXP 805
PP P P PP PA P P
Sbjct: 297 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 331
>AF000298-10|AAM97961.1| 539|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform c protein.
Length = 539
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/95 (24%), Positives = 23/95 (24%)
Frame = +2
Query: 521 PXXAPXTHLSTXXXXSCGPXPXXXRPXPSXPGXXXASIXPNTSXPXXXXXVXXRPXSXES 700
P P S S P P P P P S P P S
Sbjct: 258 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 317
Query: 701 XPPXPGXPSXXPXEXSXPPSTXXXSXPAXPSXPXP 805
PP P P PP PA P P
Sbjct: 318 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 352
>AF000298-8|AAC48255.2| 524|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 75,
isoform a protein.
Length = 524
Score = 29.1 bits (62), Expect = 7.1
Identities = 23/95 (24%), Positives = 23/95 (24%)
Frame = +2
Query: 521 PXXAPXTHLSTXXXXSCGPXPXXXRPXPSXPGXXXASIXPNTSXPXXXXXVXXRPXSXES 700
P P S S P P P P P S P P S
Sbjct: 243 PPPPPPPKGSPPLAGSGSPPPPPAAGSPPPPRTGSPPPPPTGSPPPPPAGGSPPPPRAGS 302
Query: 701 XPPXPGXPSXXPXEXSXPPSTXXXSXPAXPSXPXP 805
PP P P PP PA P P
Sbjct: 303 PPPPPPPRGSPPTGSLPPPQAGGSPPPAGTGSPPP 337
>U53333-2|AAA96155.1| 299|Caenorhabditis elegans Collagen protein
34 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/85 (25%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Frame = +2
Query: 575 PXPXXXRPXPSXPGXXXASIXP-NTSXPXXXXXVXXRPXSXE---SXPPXPGXPSXXPXE 742
P P P PG A P N P P + PP P P P +
Sbjct: 105 PGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGD 164
Query: 743 XSXPPSTXXXSXPAXPSXPXPXXXP 817
P S A P P P P
Sbjct: 165 SGEPGSPGLPGQDAAPGEPGPKGPP 189
>AF410845-1|AAL76233.1| 299|Caenorhabditis elegans cuticular
collagen RAM-4 protein.
Length = 299
Score = 28.7 bits (61), Expect = 9.5
Identities = 22/85 (25%), Positives = 24/85 (28%), Gaps = 4/85 (4%)
Frame = +2
Query: 575 PXPXXXRPXPSXPGXXXASIXP-NTSXPXXXXXVXXRPXSXE---SXPPXPGXPSXXPXE 742
P P P PG A P N P P + PP P P P +
Sbjct: 105 PGPAGTPGKPGRPGKPGAPGLPGNPGRPPQQPCEPITPPPCKPCPQGPPGPPGPPGPPGD 164
Query: 743 XSXPPSTXXXSXPAXPSXPXPXXXP 817
P S A P P P P
Sbjct: 165 SGEPGSPGLPGQDAAPGEPGPKGPP 189
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,443,270
Number of Sequences: 27780
Number of extensions: 105952
Number of successful extensions: 326
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 192
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 282
length of database: 12,740,198
effective HSP length: 83
effective length of database: 10,434,458
effective search space used: 3610322468
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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