Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D17
         (884 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1711.13 |his2||histidinol dehydrogenase His2 |Schizosaccharo...    30   0.38 
SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inosito...    28   1.5  
SPAC688.06c |slx4||structure-specific endonuclease subunit |Schi...    27   3.6  
SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces po...    26   6.2  
SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces pomb...    26   6.2  
SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyc...    26   8.2  

>SPBC1711.13 |his2||histidinol dehydrogenase His2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 439

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 17/45 (37%), Positives = 24/45 (53%)
 Frame = +2

Query: 272 VVDYAKKKSYEDLLRQAQDSTTDDDLLRVSEEMFNADINNAFNYI 406
           ++DYA K     L      +  DDDL+++S  M   DI+ AFN I
Sbjct: 54  LIDYASKFEKVQLKSAVLKAPFDDDLMKIS-PMIKEDIDIAFNNI 97


>SPCC1672.06c |asp1|vip1|inositol hexakisphosphate kinase/inositol
           pyrophosphate synthase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 920

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 21/90 (23%), Positives = 36/90 (40%)
 Frame = +2

Query: 323 QDSTTDDDLLRVSEEMFNADINNAFNYIQVNLQGKTXPMSRNDEAQSNLLXVPENVWSGP 502
           +  T   DLL+V +++   D +NA       ++     + R  +        PEN+    
Sbjct: 550 EQETIPSDLLKVRKDLL--DDSNAAKDTMDKVKKHLKSLLRVGDTARKEFTWPENMPKPC 607

Query: 503 TIRPFVALFDNYHKNVIRPEFVTPNEETEQ 592
            +   V     YH+ V+R  F+    E EQ
Sbjct: 608 EVMQQVVQLMKYHRAVMRENFIILGPEVEQ 637


>SPAC688.06c |slx4||structure-specific endonuclease subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 419

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 13/40 (32%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
 Frame = +1

Query: 493 ERTNNKTFCCTIRQLSQECDQTRVCYAE*RNGTNH-LHQH 609
           +R  + T CC IR ++ +CD          N T H +H+H
Sbjct: 39  KRKRSVTECCEIRLITSKCDFESTQQLVHHNCTGHKVHEH 78


>SPAC222.10c |byr4||two-component GAP Byr4|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 665

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 18/90 (20%), Positives = 38/90 (42%), Gaps = 1/90 (1%)
 Frame = +2

Query: 362 EEMFNADINNAFNYIQVNLQGKTXPMSRNDEAQSNLLXVPENVWSGPTI-RPFVALFDNY 538
           E+ F  D +   N I    Q +  P +     + + L  P +  +       F   F+N 
Sbjct: 178 EDDFEIDPDTDLNSILHRKQNRMDPKASFSSVEQSSLRTPSSAHNDDGFWDDFDIDFNNE 237

Query: 539 HKNVIRPEFVTPNEETEQTTYINTILATGP 628
            +++ R +  +PN   ++  YI++ ++  P
Sbjct: 238 TESIFRKKIRSPNTINQKHPYISSTISYQP 267


>SPBC17D11.01 |nep1||nedd8 protease Nep1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 420

 Score = 26.2 bits (55), Expect = 6.2
 Identities = 12/46 (26%), Positives = 19/46 (41%)
 Frame = +1

Query: 532 QLSQECDQTRVCYAE*RNGTNHLHQHYSCYGTHQEPHYFLSXHRHY 669
           + S E   + +  +     TNH + H S    H E H+    H H+
Sbjct: 263 ETSHESSNSNLKKSSESGSTNHHNNHESDKDLHHEGHHHHHHHHHH 308


>SPAC1071.10c |pma1||P-type proton ATPase Pma1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 919

 Score = 25.8 bits (54), Expect = 8.2
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = +2

Query: 320 AQDSTTDDDLLRVSEEMFNADI 385
           AQD   DDD+  + EE+F+ D+
Sbjct: 33  AQDDEPDDDIDALIEELFSEDV 54


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,798,923
Number of Sequences: 5004
Number of extensions: 49207
Number of successful extensions: 162
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 158
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 162
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)