Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D17
         (884 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0672 + 27164628-27164792,27164903-27164965,27165298-271654...    43   3e-04
01_05_0439 - 22159425-22159520,22160137-22160345,22161028-221610...    29   5.0  
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13...    29   6.6  
09_03_0127 + 12573429-12574857,12575269-12575903                       28   8.7  

>04_04_0672 +
           27164628-27164792,27164903-27164965,27165298-27165408,
           27165454-27165537,27166081-27166194,27166901-27167494,
           27167604-27167675,27167761-27167997
          Length = 479

 Score = 43.2 bits (97), Expect = 3e-04
 Identities = 25/76 (32%), Positives = 38/76 (50%), Gaps = 1/76 (1%)
 Frame = +2

Query: 443 RNDEAQSNLLX-VPENVWSGPTIRPFVALFDNYHKNVIRPEFVTPNEETEQTTYINTILA 619
           + D A   L   + ++V   PT   F AL DNY+ +    E VT  ++ E+  +I  I  
Sbjct: 252 KGDMASETLFSWLGDDVLRKPTYSRFCALLDNYNPHQGYKEVVTQQDKHEEVAFIEEIAR 311

Query: 620 TGPIRSLITFLVXTGI 667
           T PI+ L  +LV  G+
Sbjct: 312 TAPIKYLHRYLVLKGV 327


>01_05_0439 -
           22159425-22159520,22160137-22160345,22161028-22161066,
           22161196-22161356,22161447-22161518,22162002-22162183,
           22162580-22162703,22164196-22164299,22165526-22165725,
           22165838-22166069,22166156-22166239,22166329-22166386,
           22166724-22166771,22167924-22168081,22168451-22168501,
           22168585-22168658,22168760-22168835,22169685-22169729,
           22169833-22169899,22169978-22170095,22170580-22170775,
           22171551-22171640,22171985-22172039,22172755-22172975,
           22173362-22173454,22173608-22173721,22173918-22173981,
           22174081-22174181,22174306-22174447,22174528-22174729,
           22174883-22174976,22176172-22176348
          Length = 1248

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 14/31 (45%), Positives = 18/31 (58%)
 Frame = +2

Query: 326 DSTTDDDLLRVSEEMFNADINNAFNYIQVNL 418
           D  T  D L VS EM+  D NN  +Y+Q +L
Sbjct: 673 DMLTIRDALEVSAEMYKKDPNNVQDYVQRHL 703


>03_01_0016 +
           131141-131236,131743-132043,132125-132341,132440-132773,
           132883-132996,133065-133193,133293-133469,133555-133746,
           134844-134981,135327-135559,135900-136003,136633-136727,
           136817-137053,137801-137922,138252-138354,138750-138826,
           138909-139017,139107-139253,139953-140000,140292-140492,
           140589-140738,140917-141002,141088-141193,141278-141373,
           141759-141911,142647-142819,142923-142986,144056-144193,
           144548-144595,144690-144836,144907-144968,146540-146645,
           147357-147461,147548-147679,147765-147974,148070-148171,
           148261-148398
          Length = 1729

 Score = 28.7 bits (61), Expect = 6.6
 Identities = 13/46 (28%), Positives = 23/46 (50%)
 Frame = +2

Query: 383 INNAFNYIQVNLQGKTXPMSRNDEAQSNLLXVPENVWSGPTIRPFV 520
           +N A+N +Q  +Q +  P    D  +SN++     +    T+R FV
Sbjct: 455 VNTAYNLLQYEVQSRVFPAILKDATKSNVVNYLWQINPSLTLRGFV 500


>09_03_0127 + 12573429-12574857,12575269-12575903
          Length = 687

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +2

Query: 215 QQGNTAQNTFQQIGTVVGGVVDYAKKKSYEDLLR 316
           Q+  TA +T   + T      + A+K  +EDLLR
Sbjct: 356 QRSGTAASTVMTLNTAAAAAAEAARKLRFEDLLR 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,222,988
Number of Sequences: 37544
Number of extensions: 317711
Number of successful extensions: 671
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 659
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 671
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)