Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D16
         (889 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual      48   2e-06
SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr 1|||...    35   0.013
SPBC336.05c |||S-adenosylmethionine-dependentmethyltransferase|S...    30   0.38 
SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyce...    28   2.0  
SPBC215.01 ||SPBC3B9.20|GTPase activating protein|Schizosaccharo...    27   3.6  

>SPCC965.09 |||nitrilase |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 272

 Score = 47.6 bits (108), Expect = 2e-06
 Identities = 27/84 (32%), Positives = 47/84 (55%)
 Frame = +1

Query: 436 NIICFQELWNXPFAFCTREKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEK 615
           N+I F EL    +  C      + + AE   +GP+   +  LA KY + I+    E++EK
Sbjct: 39  NLILFPELITSGYE-CGNT---FTQIAEIAGEGPSFKTMSNLAAKYHVNIIYGFPEKEEK 94

Query: 616 HSDILWNTAVVISDTGNVIGKHRK 687
            S+I++N+ + I++ GN+ G +RK
Sbjct: 95  QSNIIYNSCIYITENGNLGGVYRK 118


>SPAC26A3.11 |||amidohydrolase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 322

 Score = 35.1 bits (77), Expect = 0.013
 Identities = 34/127 (26%), Positives = 58/127 (45%)
 Frame = +1

Query: 307 RIVKVGIVQHSIAVPTDRPVNEQKKAIFNKVKKIIDVAGQEGVNIICFQELWNXPFAFCT 486
           R  ++G+VQ  +A   D+  N Q   +     K+++ A + G N+I   E++N P+   T
Sbjct: 42  RAFRIGLVQ--LANTKDKSENLQLARL-----KVLEAA-KNGSNVIVLPEIFNSPYG--T 91

Query: 487 REKQPWCEFAESDEDGPTTXFLRELAIKYAMVIVSSILERDEKHSDILWNTAVVISDTGN 666
                + E  E  E  P+   L  +A      +    +   E+    L+NTA+V   +G 
Sbjct: 92  GYFNQYAEPIE--ESSPSYQALSSMAKDTKTYLFGGSIP--ERKDGKLYNTAMVFDPSGK 147

Query: 667 VIGKHRK 687
           +I  HRK
Sbjct: 148 LIAVHRK 154


>SPBC336.05c |||S-adenosylmethionine-
           dependentmethyltransferase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 378

 Score = 30.3 bits (65), Expect = 0.38
 Identities = 20/57 (35%), Positives = 27/57 (47%)
 Frame = -3

Query: 527 SSDSANSHHGCFSLVQNAKGXFHNSWKQMMLTPSWPATSMIFLTLLKIAFFCSLTGR 357
           S ++A SH  CF   QN+    +       +   +P T   F+ LLK AFF  L GR
Sbjct: 239 SKNNAASH--CFLKDQNSSILLYKKITYPFMEQLFPPTVQQFMNLLKKAFFDHLFGR 293


>SPBC21D10.09c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
            pombe|chr 2|||Manual
          Length = 1610

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 9/18 (50%), Positives = 16/18 (88%)
 Frame = +1

Query: 577  MVIVSSILERDEKHSDIL 630
            +++VS++LE DEKH D++
Sbjct: 998  LIVVSNLLEMDEKHVDVV 1015


>SPBC215.01 ||SPBC3B9.20|GTPase activating
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 834

 Score = 27.1 bits (57), Expect = 3.6
 Identities = 17/52 (32%), Positives = 28/52 (53%)
 Frame = -2

Query: 399 DFIENCFLLLVDWTIGGHRDGMLNYSYLHNSRGSGLLVLGRESVCGDVEVSL 244
           +FI+ CF    + +  GH D +++ S   +S GS    +G  S   D++VSL
Sbjct: 661 EFIQRCFHFADEASPDGHSDTLIDISDHMSSTGSENRSVGANS---DIKVSL 709


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,011,936
Number of Sequences: 5004
Number of extensions: 55562
Number of successful extensions: 185
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 176
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 184
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 446488370
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)