Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D15
         (903 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0382 - 22501041-22501279,22501717-22501810                       32   0.72 
01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008           32   0.72 
03_06_0471 + 34169562-34169892,34170121-34170347                       31   0.95 
06_03_0874 - 25580417-25580419,25580504-25580604,25580828-255814...    28   8.8  
04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076           28   8.8  

>02_04_0382 - 22501041-22501279,22501717-22501810
          Length = 110

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 25/87 (28%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
 Frame = +3

Query: 108 KFFMIFVLALLA--MANAQDPVRVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI 281
           K  ++F L L A  +A+A+      +N      +E     P   +PP    P+ + Y+P 
Sbjct: 11  KALLVFALLLAAAFVASAEQTHDDGDNPPESPDHEDPPPSPEYYDPP----PSPDYYDPP 66

Query: 282 DNGAYYVDRPQGRPYFKPTPFPGARGG 362
            +  YY D P    Y+ P P P   GG
Sbjct: 67  HSPDYY-DPPPSPDYYDPPPSPYYGGG 92


>01_01_0487 - 3591171-3592313,3593522-3593800,3594688-3595008
          Length = 580

 Score = 31.9 bits (69), Expect = 0.72
 Identities = 22/69 (31%), Positives = 28/69 (40%), Gaps = 3/69 (4%)
 Frame = +3

Query: 162 PVRVVENADSGNGYEPIDNRPYIVNPPKDYNPNGNGYEPI---DNGAYYVDRPQGRPYFK 332
           P    +  +    Y P  + P  V PP  Y P  +G  P     N + Y + P GRP   
Sbjct: 381 PPAAPQQPEEAMSYAPPQSYPPNVRPPSPYMPPPSGPAPPFYGQNQSMY-EPPVGRPNSG 439

Query: 333 PTPFPGARG 359
           P P  GA G
Sbjct: 440 PPPSYGAGG 448


>03_06_0471 + 34169562-34169892,34170121-34170347
          Length = 185

 Score = 31.5 bits (68), Expect = 0.95
 Identities = 17/50 (34%), Positives = 21/50 (42%)
 Frame = +3

Query: 201 YEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPFPG 350
           Y P    P    PP  Y P+  GY P   GAY       +P + P  +PG
Sbjct: 56  YPPAGGYPGAQYPPSGYPPSQGGYPP---GAYPPSGYPQQPGYPPAGYPG 102


>06_03_0874 -
           25580417-25580419,25580504-25580604,25580828-25581411,
           25581523-25581594,25581667-25581793,25583412-25583516,
           25583643-25583676
          Length = 341

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 18/51 (35%), Positives = 23/51 (45%)
 Frame = +3

Query: 192 GNGYEPIDNRPYIVNPPKDYNPNGNGYEPIDNGAYYVDRPQGRPYFKPTPF 344
           G  Y+P   R     PP+   P    Y P   G  Y  +PQG+PY  P P+
Sbjct: 247 GETYQPQPQRE--TYPPQ---PQVQPYPPKPQGQPYPPQPQGQPY-PPQPY 291


>04_01_0001 + 48461-48625,49314-50491,50620-50816,50896-52076
          Length = 906

 Score = 28.3 bits (60), Expect = 8.8
 Identities = 11/21 (52%), Positives = 11/21 (52%)
 Frame = +2

Query: 821 PPPPXGKXGXXFFGPPXPXXP 883
           PPPP G  G    GPP P  P
Sbjct: 370 PPPPPGAAGRGGGGPPPPALP 390


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,345,522
Number of Sequences: 37544
Number of extensions: 341451
Number of successful extensions: 729
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 675
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 726
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2553813320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)