Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D10
         (892 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A6YPK4 Cluster: Cytochrome c oxidase; n=3; Neoptera|Rep...    37   0.79 
UniRef50_Q4PM34 Cluster: Cytochrome c oxidase subunit VIc; n=1; ...    35   2.4  
UniRef50_UPI00015548E5 Cluster: PREDICTED: similar to cytochrome...    34   4.2  
UniRef50_Q9VMS1 Cluster: CG14028-PA; n=6; Diptera|Rep: CG14028-P...    33   9.8  

>UniRef50_A6YPK4 Cluster: Cytochrome c oxidase; n=3; Neoptera|Rep:
           Cytochrome c oxidase - Triatoma infestans (Assassin bug)
          Length = 76

 Score = 36.7 bits (81), Expect = 0.79
 Identities = 17/43 (39%), Positives = 26/43 (60%)
 Frame = +3

Query: 246 VKPIMRGMLHAQIKRTIASALILAAMGGAAFYFGVRLPKQKAY 374
           VKP +RG+LH+QIKR +   L+L+   G  F   +   ++K Y
Sbjct: 9   VKPQLRGLLHSQIKRNLIIGLVLSISSGFLFKTFIGDARKKQY 51


>UniRef50_Q4PM34 Cluster: Cytochrome c oxidase subunit VIc; n=1;
           Ixodes scapularis|Rep: Cytochrome c oxidase subunit VIc
           - Ixodes scapularis (Black-legged tick) (Deer tick)
          Length = 76

 Score = 35.1 bits (77), Expect = 2.4
 Identities = 15/42 (35%), Positives = 27/42 (64%)
 Frame = +3

Query: 249 KPIMRGMLHAQIKRTIASALILAAMGGAAFYFGVRLPKQKAY 374
           +P   G+L + I++ +   L LA +GG A+++GV   ++KAY
Sbjct: 5   RPQFHGLLKSYIRKHLIICLSLAGVGGVAWHYGVCEARKKAY 46


>UniRef50_UPI00015548E5 Cluster: PREDICTED: similar to cytochrome c
           oxidase subunit VIc; n=1; Ornithorhynchus anatinus|Rep:
           PREDICTED: similar to cytochrome c oxidase subunit VIc -
           Ornithorhynchus anatinus
          Length = 138

 Score = 34.3 bits (75), Expect = 4.2
 Identities = 20/43 (46%), Positives = 28/43 (65%), Gaps = 1/43 (2%)
 Frame = +3

Query: 249 KPIMRGMLHAQIKRTIASALILAAMGGAAFY-FGVRLPKQKAY 374
           KP MRG+L  +++  I  A  ++ MG AA Y FGV  P++KAY
Sbjct: 69  KPQMRGLLAKRLRFHIVGAFTVS-MGLAALYKFGVAEPRKKAY 110


>UniRef50_Q9VMS1 Cluster: CG14028-PA; n=6; Diptera|Rep: CG14028-PA -
           Drosophila melanogaster (Fruit fly)
          Length = 77

 Score = 33.1 bits (72), Expect = 9.8
 Identities = 17/41 (41%), Positives = 26/41 (63%)
 Frame = +3

Query: 252 PIMRGMLHAQIKRTIASALILAAMGGAAFYFGVRLPKQKAY 374
           P++RG+ +A IKR +A +L L A+   A+   V  PK+ AY
Sbjct: 12  PVLRGLHNATIKRNLAVSLGLTAVVTIAYKILVNDPKKAAY 52


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 624,859,687
Number of Sequences: 1657284
Number of extensions: 9819910
Number of successful extensions: 26170
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25513
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 26164
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 80342087756
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)