Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D09
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    73   3e-13
Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical pr...    28   9.8  
AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical ...    28   9.8  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 72.5 bits (170), Expect = 3e-13
 Identities = 39/84 (46%), Positives = 47/84 (55%)
 Frame = +1

Query: 91  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVAKVTGGVASKLSKIRVVRKAIARVYIV 270
           M K+KC  LR +                  LRV+KVTGG ASKLSKIRVVRK IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 271 YHQKMKVNLRNHYKNKKYKPLXFK 342
            +Q  K  LR  Y + KYKP+  +
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLR 84



 Score = 36.3 bits (80), Expect = 0.028
 Identities = 18/40 (45%), Positives = 25/40 (62%)
 Frame = +2

Query: 341 RAKKTRAMRKALTKHEAKIKTRKEIRKKSLFPPRVYAVKA 460
           R KKTRA+R+ LT HE  +++ K+  K      R +AVKA
Sbjct: 84  RLKKTRAIRRRLTAHELSLRSAKQQAKSRNQAVRKFAVKA 123


>Z70718-6|CAA94677.1| 1029|Caenorhabditis elegans Hypothetical
           protein C04G2.6 protein.
          Length = 1029

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 250 IARVYIVYHQKMKVNLRNHYKNKKYKPLXFKSQEDP 357
           +A V +V+ +  K  + NHY++  Y     ++ EDP
Sbjct: 174 VAPVVLVFDEDSKKRMENHYQHVMYLKEYIQNLEDP 209


>AL033536-3|CAA22142.1| 1564|Caenorhabditis elegans Hypothetical
           protein Y53C10A.9 protein.
          Length = 1564

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 16/47 (34%), Positives = 23/47 (48%), Gaps = 5/47 (10%)
 Frame = +1

Query: 259 VYIVYHQKMKVNLRNHYKNKKY-----KPLXFKSQEDPCYAQGSY*T 384
           ++++ H KM  +   HY  +KY       L FKS  DP   + SY T
Sbjct: 652 IFVMSHGKMAASGSKHYLKQKYGGGMLLTLVFKSVHDPMRPRKSYET 698


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,520,402
Number of Sequences: 27780
Number of extensions: 205730
Number of successful extensions: 414
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 385
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 414
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)