Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D07
         (867 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...   104   3e-21
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    82   2e-14
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    71   3e-11
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    58   3e-07
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    42   0.015
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.020
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    40   0.082
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    38   0.25 
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    38   0.44 
UniRef50_Q6MMS6 Cluster: Translation initiation factor IF-2; n=1...    34   4.1  
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    33   7.1  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score =  104 bits (250), Expect = 3e-21
 Identities = 64/120 (53%), Positives = 69/120 (57%)
 Frame = +2

Query: 422 RGEAVCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERTCEQKAXKRP 601
           R   +C  G +PLPRSLTR ARSFGCGERY+LT           G   E T  +K   + 
Sbjct: 26  RVSRICDTGDIPLPRSLTRYARSFGCGERYRLT--------DGDGNFLEDT--RKTLSKE 75

Query: 602 GXVKRPRCWRXSIGSAPLTSIXKIDAQXXGGETRXXYKDXXRXPXXAPPCALLFRPCRXP 781
               RPR  R SIGSAPLTSI K DAQ  GGETR  YKD  R P  AP CALLF P   P
Sbjct: 76  EI--RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRFPLVAPSCALLFLPFGLP 133


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 82.2 bits (194), Expect = 2e-14
 Identities = 41/63 (65%), Positives = 43/63 (68%)
 Frame = +2

Query: 593 KRPGXVKRPRCWRXSIGSAPLTSIXKIDAQXXGGETRXXYKDXXRXPXXAPPCALLFRPC 772
           K+     + RC R SIGSAPLTSI KIDAQ  GGETR  YKD  R P  AP CALLFRPC
Sbjct: 4   KQSTGTSQRRC-RFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRFPLEAPSCALLFRPC 62

Query: 773 RXP 781
           R P
Sbjct: 63  RLP 65


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 71.3 bits (167), Expect = 3e-11
 Identities = 36/54 (66%), Positives = 37/54 (68%)
 Frame = +2

Query: 608 VKRPRCWRXSIGSAPLTSIXKIDAQXXGGETRXXYKDXXRXPXXAPPCALLFRP 769
           V+ PR  R SIGSAPLTSI K DAQ  GGETR  YKD  R P  AP CALLF P
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRFPLAAPSCALLFLP 97


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 58.0 bits (134), Expect = 3e-07
 Identities = 32/57 (56%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
 Frame = +2

Query: 398 CINESANARGEAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 565
           CI + A AR EAV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.3 bits (95), Expect = 0.015
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 201 DPDMIRYIDEXGQTTTRMQ 257
           DPDMIRYIDE GQTTTRMQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.9 bits (94), Expect = 0.020
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +1

Query: 517 HSKAVIRLSXESGDNAGKNM 576
           HSKAVIRLS ESGDNAGKNM
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 39.9 bits (89), Expect = 0.082
 Identities = 19/24 (79%), Positives = 21/24 (87%)
 Frame = -1

Query: 468 ERGSGRAPNTQTASPRALADSLMQ 397
           +R +  APNTQTASPRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 38.3 bits (85), Expect = 0.25
 Identities = 15/17 (88%), Positives = 16/17 (94%)
 Frame = +3

Query: 396 SALMNRPTXGERRFAYW 446
           +ALMNRPT GERRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 37.5 bits (83), Expect = 0.44
 Identities = 27/93 (29%), Positives = 38/93 (40%), Gaps = 2/93 (2%)
 Frame = +2

Query: 497 CGERYQLTQRR*YG--YPQNQGITQERTCEQKAXKRPGXVKRPRCWRXSIGSAPLTSIXK 670
           C  R Q    R  G  +P+N  I  +R   + + + P              S PLT+I K
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 671 IDAQXXGGETRXXYKDXXRXPXXAPPCALLFRP 769
           I  Q    +T+  YK     P  +P  +LLF P
Sbjct: 82  IYPQFKNTQTQHNYKYTTPFPLQSPSYSLLFPP 114


>UniRef50_Q6MMS6 Cluster: Translation initiation factor IF-2; n=1;
           Bdellovibrio bacteriovorus|Rep: Translation initiation
           factor IF-2 - Bdellovibrio bacteriovorus
          Length = 975

 Score = 34.3 bits (75), Expect = 4.1
 Identities = 21/59 (35%), Positives = 27/59 (45%), Gaps = 1/59 (1%)
 Frame = -3

Query: 826 KAPRXPEGXKXGQVXXXAAGSEQEGARGSXPGXTPGIFIXXSGFA-TXXLSVDFXDARQ 653
           +AP+ P+G +        AG EQ GA  S  G  PG F   +G A T  +   F  A Q
Sbjct: 241 QAPQRPQGERPAGGFTPRAGGEQRGASASFTGQRPGGFNRPAGGAPTRNIRTGFVAANQ 299


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 33.5 bits (73), Expect = 7.1
 Identities = 19/38 (50%), Positives = 19/38 (50%)
 Frame = -3

Query: 598 PFXGLLLTCSFLRYXXXXXXXXXXXLSELIPLAAAERP 485
           P    LLTCSF  Y           LSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 540,784,123
Number of Sequences: 1657284
Number of extensions: 7856209
Number of successful extensions: 15809
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 15016
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 15756
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 77062818868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)