Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D06
         (1169 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    34   0.044
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.044
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    29   0.94 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.2  
SPBC14C8.03 |fma2||methionine aminopeptidase Fma2 |Schizosacchar...    28   2.9  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   3.8  
SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr 2|||M...    26   8.8  

>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 14/29 (48%), Positives = 15/29 (51%)
 Frame = +3

Query: 768 PXPPPPXPXGGGXXPPPPXPXXXKKKKXK 854
           P PPPP        PPPP P   KK+K K
Sbjct: 11  PPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39



 Score = 33.5 bits (73), Expect = 0.058
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 766 PPPPPXPXPXGGGXPXPPXXPXXXKKKKXK 855
           PPPPP P       P PP  P   KK+K K
Sbjct: 10  PPPPPPPGFEPPSQPPPPPPPGYVKKRKNK 39


>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.044
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +2

Query: 767 PXPPPXPPRXGGXXPXPPXPP 829
           P PPP PP   G  P PP PP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPPP 781



 Score = 33.9 bits (74), Expect = 0.044
 Identities = 12/20 (60%), Positives = 12/20 (60%)
 Frame = +3

Query: 768 PXPPPPXPXGGGXXPPPPXP 827
           P PPPP   G G  PPPP P
Sbjct: 763 PPPPPPGVAGAGPPPPPPPP 782



 Score = 33.5 bits (73), Expect = 0.058
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = +1

Query: 766 PPPPPXPXPXGGGXPXPPXXP 828
           PPPPP P   G G P PP  P
Sbjct: 762 PPPPPPPGVAGAGPPPPPPPP 782



 Score = 31.9 bits (69), Expect = 0.18
 Identities = 13/21 (61%), Positives = 13/21 (61%), Gaps = 1/21 (4%)
 Frame = +3

Query: 768 PXP-PPPXPXGGGXXPPPPXP 827
           P P PPP P  GG  PPPP P
Sbjct: 748 PIPVPPPAPIMGGPPPPPPPP 768


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 29.5 bits (63), Expect = 0.94
 Identities = 12/21 (57%), Positives = 12/21 (57%)
 Frame = -1

Query: 827 GXXGGXGXPPPXGXGXGGGGG 765
           G  GG G PPP   G GG GG
Sbjct: 192 GFGGGSGGPPPGPGGFGGFGG 212



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 13/25 (52%), Positives = 13/25 (52%), Gaps = 1/25 (4%)
 Frame = -2

Query: 838 FXXXGXGGGGXXPPPXGXGG-GGXG 767
           F   G G GG  P P G GG GG G
Sbjct: 190 FGGFGGGSGGPPPGPGGFGGFGGFG 214



 Score = 27.5 bits (58), Expect = 3.8
 Identities = 12/25 (48%), Positives = 12/25 (48%)
 Frame = -3

Query: 840 FXXXGGXGGXGXXPPXRGGXGGGXG 766
           F   GG GG G      GG GGG G
Sbjct: 207 FGGFGGFGGEGHHHGGHGGFGGGPG 231


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 28.3 bits (60), Expect = 2.2
 Identities = 12/22 (54%), Positives = 12/22 (54%), Gaps = 2/22 (9%)
 Frame = +3

Query: 768  PXPP--PPXPXGGGXXPPPPXP 827
            P PP  PP P G    PPPP P
Sbjct: 1715 PPPPSAPPMPAGPPSAPPPPLP 1736


>SPBC14C8.03 |fma2||methionine aminopeptidase Fma2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 426

 Score = 27.9 bits (59), Expect = 2.9
 Identities = 13/32 (40%), Positives = 13/32 (40%)
 Frame = +2

Query: 704 GXGGGXXKXKKKKKKKKXXXXPXPPPXPPRXG 799
           G   G  K KKKKK  K    P     PP  G
Sbjct: 41  GASNGEKKKKKKKKSSKKKKTPQEQTNPPTVG 72


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 3.8
 Identities = 10/21 (47%), Positives = 10/21 (47%)
 Frame = +2

Query: 767 PXPPPXPPRXGGXXPXPPXPP 829
           P PPP PP   G    PP  P
Sbjct: 251 PAPPPIPPPSNGTVSSPPNSP 271


>SPBC13E7.09 |vrp1||verprolin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 309

 Score = 26.2 bits (55), Expect = 8.8
 Identities = 9/18 (50%), Positives = 9/18 (50%)
 Frame = +3

Query: 768 PXPPPPXPXGGGXXPPPP 821
           P PPPP P      P PP
Sbjct: 5   PPPPPPAPAPAAAAPAPP 22


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,722,615
Number of Sequences: 5004
Number of extensions: 20274
Number of successful extensions: 280
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 158
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 627537330
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)