Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D04
         (723 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1; ...    36   0.77 
UniRef50_Q4X6Z3 Cluster: Putative uncharacterized protein; n=1; ...    34   4.1  
UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep: ...    34   4.1  

>UniRef50_A5KRM5 Cluster: Putative uncharacterized protein; n=1;
           Ruminococcus torques ATCC 27756|Rep: Putative
           uncharacterized protein - Ruminococcus torques ATCC
           27756
          Length = 159

 Score = 36.3 bits (80), Expect = 0.77
 Identities = 26/69 (37%), Positives = 26/69 (37%), Gaps = 2/69 (2%)
 Frame = -2

Query: 632 FFFXXGXGGGXXXFXFFXXXXXXXXXPXXXXXXFFFFXGGXXXXPXFGVGGXPPXX--KK 459
           FF   G GGG   F FF                FFFF  G      FG G  PP    KK
Sbjct: 19  FFVGCGGGGGGPLFFFFFFSKKKKKR--GCLFFFFFFPRGEKIF-FFGGGAPPPPPPLKK 75

Query: 458 XXXFFFFFF 432
               FFFFF
Sbjct: 76  KKKIFFFFF 84



 Score = 35.1 bits (77), Expect = 1.8
 Identities = 27/81 (33%), Positives = 29/81 (35%), Gaps = 3/81 (3%)
 Frame = -1

Query: 627 FXXGXGXGGXXFXFFXXXXXXXXXPXXXXKXFFFFXGGGEXXPLXWGGGA---PXXXKKX 457
           F  G G GG    FF                FFFF  G +     +GGGA   P   KK 
Sbjct: 19  FFVGCGGGGGGPLFFFFFFSKKKKKRGCLFFFFFFPRGEKI--FFFGGGAPPPPPPLKKK 76

Query: 456 XXXFFFFFXXXXXXXKKXFFF 394
              FFFFF          FFF
Sbjct: 77  KKIFFFFFKKRGGGGGFFFFF 97


>UniRef50_Q4X6Z3 Cluster: Putative uncharacterized protein; n=1;
           Plasmodium chabaudi|Rep: Putative uncharacterized
           protein - Plasmodium chabaudi
          Length = 120

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 27/82 (32%), Positives = 29/82 (35%), Gaps = 3/82 (3%)
 Frame = -3

Query: 631 FFXXXGGXGGXXFXFFFXXXXXXXXPXXXXKXFFFFXGGGXXXP-PXLG--WGGXXXXKK 461
           FF    G GG    FFF        P      F    GGG     P  G  + G    KK
Sbjct: 5   FFSFSPGGGGG---FFFFCGKPPPPPLFFFSPFLGKKGGGDNFFFPRAGEIFFGGVFKKK 61

Query: 460 XXXXFFFFFFXXXXFXKKXFFF 395
               FFFFFF    F    FF+
Sbjct: 62  KNFLFFFFFFFFFFFHNNIFFY 83


>UniRef50_A5JUU8 Cluster: Formin B; n=2; Trypanosoma brucei|Rep:
           Formin B - Trypanosoma brucei TREU927
          Length = 1004

 Score = 33.9 bits (74), Expect = 4.1
 Identities = 20/75 (26%), Positives = 20/75 (26%)
 Frame = +3

Query: 480 PPHPKXGGXXXPPPKKKKXXXXXXXGXXXXXXXXKKXKXXXPPXPPXXKKKXXXXXXXXX 659
           PP P  GG   PPP                           PP PP   K          
Sbjct: 489 PPPPPPGGKLPPPPPPPPGGKLPPPPPPPGKAPPPPPGGKLPPPPPPGGKGAPPPPPPPP 548

Query: 660 XXFXXGGXXGPPPPP 704
                GG   PPPPP
Sbjct: 549 GKLGPGGGPPPPPPP 563


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 357,316,280
Number of Sequences: 1657284
Number of extensions: 5128286
Number of successful extensions: 21814
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 9108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 20188
length of database: 575,637,011
effective HSP length: 98
effective length of database: 413,223,179
effective search space used: 58677691418
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)