Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D03
         (849 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.13 |swc5||chromatin remodeling complex subunit Swc5|Schi...    31   0.21 
SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces pomb...    29   1.1  
SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr ...    27   2.5  
SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence orphan|Sc...    27   2.5  
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S...    27   4.4  
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    27   4.4  

>SPCC576.13 |swc5||chromatin remodeling complex subunit
           Swc5|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 215

 Score = 31.1 bits (67), Expect = 0.21
 Identities = 19/60 (31%), Positives = 32/60 (53%), Gaps = 4/60 (6%)
 Frame = +2

Query: 173 LEEQLYNSVVVADYDSAVE--KSKH--LYEEKKSEVITNVVNKLIRNNKMNCMEYAYQLW 340
           L E   +  V  D +S  E  K KH  + + +KS + ++   K+++ NK+N +E A Q W
Sbjct: 110 LAESNSSVAVEGDENSYAETPKKKHSLIRKRRKSPLDSSSAQKVLKKNKLNTLEQAQQNW 169


>SPAC22F3.04 |mug62||AMP binding enzyme |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1428

 Score = 28.7 bits (61), Expect = 1.1
 Identities = 13/25 (52%), Positives = 17/25 (68%)
 Frame = -2

Query: 428 VHKLNRVFGEDKSELNWETIPDDVL 354
           +H +     EDKS+L +ETIPD VL
Sbjct: 9   IHPVRHSKYEDKSKLPFETIPDPVL 33


>SPBC713.06 |adl1|lig3|DNA ligase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 774

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/33 (36%), Positives = 20/33 (60%)
 Frame = +2

Query: 254 KKSEVITNVVNKLIRNNKMNCMEYAYQLWLQGL 352
           K+   +T+  NKL+ ++  +  +YAY L LQ L
Sbjct: 35  KREAQLTDTPNKLLTDHDQSASDYAYALKLQQL 67


>SPAC1556.06.1 |meu1|SPAC1556.06a, SPAC1556.06|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 776

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 12/27 (44%), Positives = 17/27 (62%)
 Frame = +2

Query: 182 QLYNSVVVADYDSAVEKSKHLYEEKKS 262
           QL N     DY+   E++K LY+E+KS
Sbjct: 184 QLQNENFKDDYEKIKEENKRLYKERKS 210


>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
           Prp31|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 13/23 (56%), Positives = 16/23 (69%)
 Frame = +1

Query: 373 VSQLSSDLSSPKTRLSLCTSATV 441
           VS L +DL + KT+LS   SATV
Sbjct: 166 VSSLLNDLDNSKTKLSFLPSATV 188


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/32 (50%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 352 PRTSSGIVSQLSSDLSSP-KTRLSLCTSATVS 444
           P T S + S LSS  SSP  T LS+ +S+T S
Sbjct: 570 PSTFSSVSSILSSSTSSPSSTSLSISSSSTSS 601


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,126,305
Number of Sequences: 5004
Number of extensions: 31403
Number of successful extensions: 125
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 116
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)