Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D03
         (849 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical pr...    31   0.78 
Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical p...    30   1.8  
Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical p...    30   1.8  

>Z19153-3|CAA79547.1|  301|Caenorhabditis elegans Hypothetical
           protein C38C10.3 protein.
          Length = 301

 Score = 31.5 bits (68), Expect = 0.78
 Identities = 20/67 (29%), Positives = 36/67 (53%), Gaps = 3/67 (4%)
 Frame = +1

Query: 253 EEERSHHKCREQTDTKQQDELHGVRLSTLAPG---APRTSSGIVSQLSSDLSSPKTRLSL 423
           E   S++K ++  +  Q++      L+ +  G   A + SSG+VSQ+SS  SS + R +L
Sbjct: 56  ESPTSYNKYQKNVEPVQKENQKPKDLNKMTAGPHIAVKNSSGLVSQISSTTSSERKRRTL 115

Query: 424 CTSATVS 444
              ++ S
Sbjct: 116 ARPSSSS 122


>Z46934-11|CAE18043.1|  497|Caenorhabditis elegans Hypothetical
           protein ZK1320.12b protein.
          Length = 497

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 209 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 319
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


>Z46934-10|CAD18882.1|  495|Caenorhabditis elegans Hypothetical
           protein ZK1320.12a protein.
          Length = 495

 Score = 30.3 bits (65), Expect = 1.8
 Identities = 14/37 (37%), Positives = 21/37 (56%)
 Frame = +2

Query: 209 DYDSAVEKSKHLYEEKKSEVITNVVNKLIRNNKMNCM 319
           D D + EK +    +KK   IT++VN +IRN    C+
Sbjct: 205 DIDFSYEKVREAMSQKKRNGITSLVNYMIRNYPSICL 241


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,001,940
Number of Sequences: 27780
Number of extensions: 186807
Number of successful extensions: 644
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 644
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2108493618
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)