Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_D02
(816 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 41 2e-04
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac... 27 4.2
SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase Y|Schizosacch... 26 7.4
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 9.7
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 41.1 bits (92), Expect = 2e-04
Identities = 19/54 (35%), Positives = 23/54 (42%), Gaps = 1/54 (1%)
Frame = +2
Query: 317 PXPPPPXXGXKXXPPXGKKNPXXFXPPPPPXGXFXXXGG-XXPXKKKXXPPPXP 475
P PPPP + PP G + PPPPP G P + + PPP P
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPP 365
Score = 33.5 bits (73), Expect = 0.037
Identities = 20/59 (33%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPP----XXGXKXXPPXGKKNPXXFXPPPPP 406
PP + PP G P PPPP G PP G+ P PPPPP
Sbjct: 312 PPPPPPSRRNRGKPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAP----PPPPP 366
Score = 27.5 bits (58), Expect = 2.4
Identities = 25/103 (24%), Positives = 26/103 (25%), Gaps = 11/103 (10%)
Frame = +2
Query: 317 PXPPPPXXGXKXXPPXGKKNPXX-----------FXPPPPPXGXFXXXGGXXPXKKKXXP 463
P PPP G PP P PP PP KK+ P
Sbjct: 254 PPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINSTSKPPLPPPSSRVSAAALAANKKRPPP 313
Query: 464 PPXPFXXXXGXKXPXXXXPXXFXXXXXPXPXXPXXPXXXXFPP 592
PP P G K P P P PP
Sbjct: 314 PPPPSRRNRG-KPPIGNGSSNSSLPPPPPPPRSNAAGSIPLPP 355
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/53 (26%), Positives = 14/53 (26%)
Frame = +1
Query: 244 PXXPGXXXXKXXPPXGXPXXXXFXPXPXPXLXXXKKXPPPXXKKPXXFXPPPP 402
P G PP P P P PPP P PPP
Sbjct: 326 PIGNGSSNSSLPPPPPPPRSNAAGSIPLPPQGRSAPPPPPPRSAPSTGRQPPP 378
>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
Spp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2363
Score = 26.6 bits (56), Expect = 4.2
Identities = 11/26 (42%), Positives = 12/26 (46%)
Frame = +2
Query: 329 PPXXGXKXXPPXGKKNPXXFXPPPPP 406
PP PP G + P PPPPP
Sbjct: 5 PPGNPPPPPPPPGFEPPSQPPPPPPP 30
>SPAC19G12.10c |cpy1|pcy1|vacuolar carboxypeptidase
Y|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1002
Score = 25.8 bits (54), Expect = 7.4
Identities = 9/16 (56%), Positives = 9/16 (56%)
Frame = +1
Query: 355 PPPXXKKPXXFXPPPP 402
PPP KP PPPP
Sbjct: 209 PPPMHHKPGEHMPPPP 224
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 210 PPMHHKPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 263
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 223 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 276
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 236 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 289
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 249 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 302
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 262 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 315
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 275 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 328
Score = 25.8 bits (54), Expect = 7.4
Identities = 14/54 (25%), Positives = 15/54 (27%)
Frame = +2
Query: 242 PPXXXXXFXKKXXPPXGXQXXXXFXPXPPPPXXGXKXXPPXGKKNPXXFXPPPP 403
PP PP + P P G PP P PPPP
Sbjct: 288 PPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPPMHHEPGEHMPPPP 341
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.4 bits (53), Expect = 9.7
Identities = 11/30 (36%), Positives = 11/30 (36%)
Frame = +2
Query: 317 PXPPPPXXGXKXXPPXGKKNPXXFXPPPPP 406
P PPP PP PPPPP
Sbjct: 750 PVPPPAPIMGGPPPPPPPPGVAGAGPPPPP 779
Score = 25.4 bits (53), Expect = 9.7
Identities = 12/38 (31%), Positives = 13/38 (34%)
Frame = +1
Query: 316 PXPXPXLXXXKKXPPPXXKKPXXFXPPPPXXGXXXXGG 429
P P P + PPP PPPP GG
Sbjct: 752 PPPAPIMGGPPPPPPPPGVAGAGPPPPPPPPPAVSAGG 789
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,662,417
Number of Sequences: 5004
Number of extensions: 27428
Number of successful extensions: 148
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 25
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 398435810
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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