Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_D01
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein Hsp60...    29   0.85 
SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit Srb9...    27   3.4  
SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1 |Schizosacch...    27   3.4  
SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT |Schizosa...    27   4.5  
SPAC4G9.04c |||cleavage and polyadenylation specificity factor |...    27   4.5  
SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase |Schi...    26   7.9  

>SPAC12G12.04 |hsp60|hsp60|mitochondrial heat shock protein
           Hsp60|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 582

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 14/43 (32%), Positives = 25/43 (58%)
 Frame = +3

Query: 438 AKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSGVL 566
           AK  G   ++ VGG ++ E  EK + ++++  A  A ++ GVL
Sbjct: 402 AKLSGGIAVIKVGGSSEVEVNEKKDRIVDALNAVKAAVSEGVL 444


>SPAC589.02c |med13|spTrap240, srb9|mediator complex subunit
            Srb9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1223

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 17/61 (27%), Positives = 25/61 (40%)
 Frame = +3

Query: 282  LPLDLDPALSFCTHLLYGYAGIQPDTYKLVSLNENLDIDRTHDNYRAITSLKAKYPGLTV 461
            +P+  D      T L  GY  +  D   L  L+ +L I R HD Y  +  +   Y  +  
Sbjct: 1125 MPVPNDEFKKISTILARGYLALDEDESYLPLLSIHLLISRNHDPYLMLNLILKHYLSMIY 1184

Query: 462  L 464
            L
Sbjct: 1185 L 1185


>SPAC22E12.04 |ccs1|pccs, pccs|metallochaperone Ccs1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 297

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 15/39 (38%), Positives = 19/39 (48%)
 Frame = -1

Query: 336 SRTASGCRTTERDRGPTAACGLEIL*HSSCCRSNKVLCC 220
           S+   GC +TE+    T+ C  E     SCC S K  CC
Sbjct: 257 SQEKKGCCSTEK----TSCCSQE---KKSCCTSEKPSCC 288


>SPBC16A3.10 |||membrane bound O-acyltransferase, MBOAT
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 509

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 11/42 (26%), Positives = 18/42 (42%)
 Frame = +1

Query: 568 WLXNMVSMELXSPGQFPRVKPXKIRSXXGSLWHGIXXXFGXT 693
           WL N V + +   G+ P  K         ++WHG+   +  T
Sbjct: 331 WLRNYVYLRVAKKGKRPGFKSTLSTFTVSAMWHGVSAGYYLT 372


>SPAC4G9.04c |||cleavage and polyadenylation specificity factor
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 638

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 17/53 (32%), Positives = 28/53 (52%)
 Frame = -3

Query: 604 AXSIPSKPYXSANSTPELMKAVRACCDSSRRLYFSGSSVSASPPTDNNTVRPG 446
           A S+PS    S +STP +  ++ +   +    Y   +SVS+ PP  ++ V PG
Sbjct: 280 APSVPSA-LSSISSTPFMKPSIPSTIPTIPSAY--SASVSSQPPLTHSYVHPG 329


>SPCC364.07 ||SPCC4G3.01|D-3 phosphoglycerate dehydrogenase
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 466

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 17/55 (30%), Positives = 28/55 (50%)
 Frame = +3

Query: 396 DRTHDNYRAITSLKAKYPGLTVLLSVGGDADTEEPEKYNLLLESQQARTAFINSG 560
           D+  D+  + TS       + +   +GG   TEE + YN+ +E  +A T +IN G
Sbjct: 320 DKFVDSLNSWTSELTHCKNIILTPHIGGS--TEEAQ-YNIGIEVSEALTRYINEG 371


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,423,804
Number of Sequences: 5004
Number of extensions: 41285
Number of successful extensions: 109
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 102
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 108
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)