Bombyx BLAST Result against uniref50

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C23
         (899 letters)

Database: uniref50 
           1,657,284 sequences; 575,637,011 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1; ...    96   9e-19
UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9; ...    75   3e-12
UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular organi...    70   9e-11
UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3; ...    60   6e-08
UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE...    56   2e-06
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru...    43   0.012
UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep: Alpha-h...    42   0.028
UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1; ...    40   0.065
UniRef50_P03023 Cluster: Lactose operon repressor; n=24; Enterob...    38   0.35 
UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4; Ma...    36   1.4  
UniRef50_Q12GC2 Cluster: Putative uncharacterized protein precur...    34   4.3  

>UniRef50_Q6UUU1 Cluster: Putative uncharacterized protein; n=1;
           Escherichia coli|Rep: Putative uncharacterized protein -
           Escherichia coli
          Length = 147

 Score = 96.3 bits (229), Expect = 9e-19
 Identities = 55/99 (55%), Positives = 64/99 (64%)
 Frame = +2

Query: 446 VCVLGALPLPRSLTRCARSFGCGERYQLTQRR*YGYPQNQGITQERXCEQKASKRPGTVK 625
           +C  G +PLPRSLTR ARSFGCGERY+LT     G       T++   +++         
Sbjct: 30  ICDTGDIPLPRSLTRYARSFGCGERYRLTD----GDGNFLEDTRKTLSKEEI-------- 77

Query: 626 RPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRF 742
           RPR  RFSIGSAPLTSI K DAQ+ GGETRQDYKD  RF
Sbjct: 78  RPRRSRFSIGSAPLTSIAKSDAQISGGETRQDYKDPRRF 116


>UniRef50_Q5QJQ3 Cluster: Putative uncharacterized protein; n=9;
           root|Rep: Putative uncharacterized protein - Salmonella
           typhimurium
          Length = 127

 Score = 74.5 bits (175), Expect = 3e-12
 Identities = 37/47 (78%), Positives = 38/47 (80%)
 Frame = +2

Query: 602 SKRPGTVKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRF 742
           SK+  T    R  RFSIGSAPLTSITKIDAQVRGGETRQDYKDT RF
Sbjct: 2   SKKQSTGTSQRRCRFSIGSAPLTSITKIDAQVRGGETRQDYKDTRRF 48



 Score = 39.9 bits (89), Expect = 0.086
 Identities = 19/31 (61%), Positives = 20/31 (64%)
 Frame = +3

Query: 744 PLXAPSCALLFRPCRXPXYLSAXSPFGKAWR 836
           PL APSCALLFRPCR P      S   +AWR
Sbjct: 49  PLEAPSCALLFRPCRLPDTCPPFS-LREAWR 78


>UniRef50_A7SXR8 Cluster: Predicted protein; n=4; cellular
           organisms|Rep: Predicted protein - Nematostella
           vectensis
          Length = 97

 Score = 69.7 bits (163), Expect = 9e-11
 Identities = 33/41 (80%), Positives = 35/41 (85%)
 Frame = +2

Query: 620 VKRPRCWRFSIGSAPLTSITKIDAQVRGGETRQDYKDTXRF 742
           V+ PR  RFSIGSAPLTSITK DAQ+ GGETRQDYKDT RF
Sbjct: 44  VRGPRQSRFSIGSAPLTSITKSDAQISGGETRQDYKDTRRF 84


>UniRef50_O69419 Cluster: Putative uncharacterized protein; n=3;
           root|Rep: Putative uncharacterized protein - Escherichia
           coli
          Length = 61

 Score = 60.5 bits (140), Expect = 6e-08
 Identities = 29/38 (76%), Positives = 29/38 (76%)
 Frame = -2

Query: 610 PFAGLLLTXSFLRYPLILWITVLPPLSELIPLAAAERP 497
           P    LLT SF  YPLILWITVLPPLSEL PLAA ERP
Sbjct: 19  PVLCFLLTCSFRLYPLILWITVLPPLSELTPLAAVERP 56


>UniRef50_Q9KHC4 Cluster: SocE; n=1; Myxococcus xanthus|Rep: SocE -
           Myxococcus xanthus
          Length = 486

 Score = 55.6 bits (128), Expect = 2e-06
 Identities = 31/57 (54%), Positives = 34/57 (59%), Gaps = 1/57 (1%)
 Frame = +2

Query: 410 CINESANARGXAVCVLGALPLPRSLTRCARSFGCGERYQL-TQRR*YGYPQNQGITQ 577
           CI + A AR  AV VL ALPL RS TRC RS GCG      +  R YG PQ QG+ Q
Sbjct: 266 CIRDPATARSEAVWVLVALPLLRSRTRCVRSVGCGGAVSAHSPGRPYGDPQPQGMAQ 322


>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
           Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
           (SV40)
          Length = 364

 Score = 42.7 bits (96), Expect = 0.012
 Identities = 18/19 (94%), Positives = 18/19 (94%)
 Frame = +3

Query: 213 DPDMIRYIDEFGQTTTXMQ 269
           DPDMIRYIDEFGQTTT MQ
Sbjct: 346 DPDMIRYIDEFGQTTTRMQ 364


>UniRef50_Q44068 Cluster: Alpha-hemolysin; n=2; root|Rep:
           Alpha-hemolysin - Aeromonas hydrophila
          Length = 59

 Score = 41.5 bits (93), Expect = 0.028
 Identities = 19/20 (95%), Positives = 19/20 (95%)
 Frame = +1

Query: 529 HSKAVIRLSTESGDNAGKXM 588
           HSKAVIRLSTESGDNAGK M
Sbjct: 40  HSKAVIRLSTESGDNAGKNM 59


>UniRef50_A7BN23 Cluster: Putative uncharacterized protein; n=1;
           Beggiatoa sp. SS|Rep: Putative uncharacterized protein -
           Beggiatoa sp. SS
          Length = 114

 Score = 40.3 bits (90), Expect = 0.065
 Identities = 26/80 (32%), Positives = 37/80 (46%), Gaps = 2/80 (2%)
 Frame = +2

Query: 509 CGERYQLTQRR*YG--YPQNQGITQERXCEQKASKRPGTVKRPRCWRFSIGSAPLTSITK 682
           C  R Q    R  G  +P+N  I  +R   + + + P T        F   S PLT+ITK
Sbjct: 22  CCHRQQCLLNRNLGLDHPRNHKIMHQRALIRNSPQTPRTYNYTLSSLFPYNSPPLTTITK 81

Query: 683 IDAQVRGGETRQDYKDTXRF 742
           I  Q +  +T+ +YK T  F
Sbjct: 82  IYPQFKNTQTQHNYKYTTPF 101


>UniRef50_P03023 Cluster: Lactose operon repressor; n=24;
           Enterobacteriaceae|Rep: Lactose operon repressor -
           Escherichia coli (strain K12)
          Length = 360

 Score = 37.9 bits (84), Expect = 0.35
 Identities = 18/24 (75%), Positives = 20/24 (83%)
 Frame = -3

Query: 480 ERGSGRAPNTQTAXPRALADSLMQ 409
           +R +  APNTQTA PRALADSLMQ
Sbjct: 325 KRKTTLAPNTQTASPRALADSLMQ 348


>UniRef50_A0ST23 Cluster: Putative reverse transcriptase; n=4;
           Magnoliophyta|Rep: Putative reverse transcriptase -
           Zingiber officinale (Ginger)
          Length = 49

 Score = 35.9 bits (79), Expect = 1.4
 Identities = 14/17 (82%), Positives = 15/17 (88%)
 Frame = +3

Query: 408 SALMNRPTXGXRRFAYW 458
           +ALMNRPT G RRFAYW
Sbjct: 25  AALMNRPTRGERRFAYW 41


>UniRef50_Q12GC2 Cluster: Putative uncharacterized protein
           precursor; n=2; Polaromonas|Rep: Putative
           uncharacterized protein precursor - Polaromonas sp.
           (strain JS666 / ATCC BAA-500)
          Length = 268

 Score = 34.3 bits (75), Expect = 4.3
 Identities = 16/44 (36%), Positives = 26/44 (59%), Gaps = 3/44 (6%)
 Frame = -2

Query: 619 GSWPFAGLLLTXSFLRYP---LILWITVLPPLSELIPLAAAERP 497
           G W  +G  L    L++    LI+W+  LPPL++ IP+A+ + P
Sbjct: 158 GVWLSSGNALPWGLLQFGGMGLIVWLACLPPLADEIPMASGDSP 201


  Database: uniref50
    Posted date:  Oct 5, 2007 11:19 AM
  Number of letters in database: 575,637,011
  Number of sequences in database:  1,657,284
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 633,969,436
Number of Sequences: 1657284
Number of extensions: 10507642
Number of successful extensions: 22804
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 22165
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 22798
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 81571813589
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)