Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C21
         (850 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC2D10.09 |||3-hydroxyisobutyryl-CoA hydrolase|Schizosaccharom...    75   2e-14
SPAC664.01c |swi6|SPAC824.10c|chromodomain protein Swi6|Schizosa...    29   0.83 
SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces po...    27   2.5  
SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces pom...    26   5.9  
SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr 1...    26   7.8  

>SPBC2D10.09 |||3-hydroxyisobutyryl-CoA
           hydrolase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 429

 Score = 74.5 bits (175), Expect = 2e-14
 Identities = 56/184 (30%), Positives = 85/184 (46%), Gaps = 10/184 (5%)
 Frame = +1

Query: 142 LNKCKVVSATSQASIKFYSTASYENIKVEVVGSKKNVGLIQLNRPKALNALCKPLFVELG 321
           LN    +S     + KFYST+S + +  E   SK    +  LNRPK LNA+   +   + 
Sbjct: 33  LNASSTMSRAFIRNPKFYSTSSNDTVLYE---SKNGARIFTLNRPKVLNAINVDMIDSIL 89

Query: 322 KAVNDFDADSNIAAIIIT-GNEKAFAAGADIKEMXNNTYSSN---TKQGFLREWE---DI 480
             +   + +SN+A +II  GN ++F++G DIK    +         +  F +E+     +
Sbjct: 90  PKLVSLE-ESNLAKVIILKGNGRSFSSGGDIKAAALSIQDGKLPEVRHAFAQEYRLSHTL 148

Query: 481 SNCGKPIIAAVXGFALGGGCELAMLCDIIYAGEKAKFGXPEINIGTIPGAGGT---QRLP 651
           +   KP++A + G  +GGG  LAM      A E   F  PE  IG       +    RLP
Sbjct: 149 ATYQKPVVALMNGITMGGGSGLAMHVPFRIACEDTMFAMPETGIGYFTDVAASFFFSRLP 208

Query: 652 RYVG 663
            Y G
Sbjct: 209 GYFG 212


>SPAC664.01c |swi6|SPAC824.10c|chromodomain protein
           Swi6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 328

 Score = 29.1 bits (62), Expect = 0.83
 Identities = 13/31 (41%), Positives = 18/31 (58%)
 Frame = +2

Query: 581 RRNSVXPRSTLAPSPEPEAPSVFPDTLASRK 673
           RR+S   RS +    EPE PS+  + +AS K
Sbjct: 10  RRSSTSKRSVIDDDSEPELPSMTKEAIASHK 40


>SPBC1105.16c |rpr2||RNase P subunit Rpr2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 107

 Score = 27.5 bits (58), Expect = 2.5
 Identities = 13/32 (40%), Positives = 18/32 (56%), Gaps = 1/32 (3%)
 Frame = +3

Query: 102 CRYCNSCFA-GKECTEQVQSGIRNKPSIYKVL 194
           C+ CNS    GK C+ + +   R  PSI +VL
Sbjct: 59  CKGCNSLLVPGKSCSIRFEEPSRKNPSIDRVL 90


>SPBC354.10 |||RNAPII degradation factor |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 963

 Score = 26.2 bits (55), Expect = 5.9
 Identities = 11/26 (42%), Positives = 13/26 (50%)
 Frame = +2

Query: 575 AKRRNSVXPRSTLAPSPEPEAPSVFP 652
           AK +  V P    AP  EP  PS+ P
Sbjct: 290 AKSKKKVTPAPAPAPESEPSKPSIAP 315


>SPAPB17E12.09 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 203

 Score = 25.8 bits (54), Expect = 7.8
 Identities = 15/38 (39%), Positives = 24/38 (63%), Gaps = 3/38 (7%)
 Frame = +1

Query: 424 NNTYSS--NTK-QGFLREWEDISNCGKPIIAAVXGFAL 528
           NNT+ +  N K +G+++E E +SN  K + AAV   A+
Sbjct: 85  NNTFQNPCNRKIEGYIKEIERLSNSNKNLQAAVLQMAV 122


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,999,769
Number of Sequences: 5004
Number of extensions: 58511
Number of successful extensions: 154
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 147
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 420459900
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)