Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C20
         (864 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein L27|Schizosac...    95   1e-20
SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein L27|Schizosacch...    89   8e-19
SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces p...    31   0.16 
SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr...    30   0.37 
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula...    28   1.5  
SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces pomb...    28   2.0  
SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyce...    27   2.6  
SPAC16A10.08c |mug74|SPAC589.01c|sequence orphan|Schizosaccharom...    27   3.4  
SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr...    26   7.9  

>SPBC685.07c |rpl2701|rpl27-1|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 136

 Score = 95.1 bits (226), Expect = 1e-20
 Identities = 44/87 (50%), Positives = 58/87 (66%), Gaps = 2/87 (2%)
 Frame = +3

Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 407
           P KV K MG  +I +RS++KPF+KVVNYNHLMPTRY ++    K   +A   K+P +R  
Sbjct: 50  PLKVTKSMGAKRIARRSRVKPFIKVVNYNHLMPTRYALELDNLKGLITADTFKEPTQRSA 109

Query: 408 LRFNTRVRFEERYKSGKNKWFFQKLRF 488
            R   +  FEE+Y+SGK+ WFF  LRF
Sbjct: 110 ARKTVKKTFEEKYQSGKSAWFFTPLRF 136



 Score = 42.7 bits (96), Expect = 6e-05
 Identities = 16/33 (48%), Positives = 26/33 (78%)
 Frame = +1

Query: 85  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 183
           M KI+KPGKV L+  GR+AG+K ++++  D+G+
Sbjct: 1   MVKILKPGKVALITRGRFAGKKVVILQAIDQGS 33



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 194 PYGHAFVAGIDRYP 235
           P+GHA VAG++RYP
Sbjct: 37  PFGHAVVAGVERYP 50


>SPCC74.05 |rpl2702|rpl27-2|60S ribosomal protein
           L27|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 136

 Score = 89.0 bits (211), Expect = 8e-19
 Identities = 40/87 (45%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
 Frame = +3

Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 407
           P KV K MG  +I KRS++KPF+KV+NYNHLMPTRY ++    K   +     +P++R  
Sbjct: 50  PLKVTKSMGAKRIAKRSRVKPFIKVINYNHLMPTRYALELDNLKGLVTPTTFSEPSQRSA 109

Query: 408 LRFNTRVRFEERYKSGKNKWFFQKLRF 488
            +   +  FEE+Y++GK+ WFF  LRF
Sbjct: 110 AKKTVKNTFEEKYQTGKSAWFFTPLRF 136



 Score = 46.4 bits (105), Expect = 5e-06
 Identities = 18/33 (54%), Positives = 27/33 (81%)
 Frame = +1

Query: 85  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGT 183
           M KI+KPGKV LV  GR+AG+K ++++N D+G+
Sbjct: 1   MVKILKPGKVALVTRGRFAGKKVVILQNVDQGS 33



 Score = 30.3 bits (65), Expect = 0.37
 Identities = 10/14 (71%), Positives = 13/14 (92%)
 Frame = +2

Query: 194 PYGHAFVAGIDRYP 235
           P+GHA VAG++RYP
Sbjct: 37  PFGHAVVAGVERYP 50


>SPCC622.18 |rpl6||60S ribosomal protein L6|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 195

 Score = 31.5 bits (68), Expect = 0.16
 Identities = 10/34 (29%), Positives = 23/34 (67%)
 Frame = +1

Query: 76  PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDE 177
           P+K+   + PG V ++L+GR+ G++ +V+   ++
Sbjct: 45  PTKLRASLAPGTVCILLAGRFRGKRVVVLSQLED 78


>SPCC576.05 |||nucear export factor|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1024

 Score = 30.3 bits (65), Expect = 0.37
 Identities = 18/52 (34%), Positives = 21/52 (40%)
 Frame = -2

Query: 374 CAKFFKAEVNCITCWHQVIVVYNLDERLYLGPLVDFILSHPLVHFXGGTCRY 219
           CAKF   E N  + WH     YNL  R Y   + D +   P      G C Y
Sbjct: 772 CAKFSLKETNKTSFWHS---SYNLFNRQYHVDMPDNVSDLPQTRLCYGACVY 820


>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
           protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1400

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = -1

Query: 120 QHYFTRLHYFAHLGGIFPLLVDIAIKIL 37
           Q YFT ++ F   G +FP +VD    IL
Sbjct: 803 QQYFTAIYKFEGCGSVFPFVVDPFTTIL 830


>SPAC144.08 |||DNAJ domain protein Jac1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 225

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 16/46 (34%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
 Frame = +3

Query: 258 GKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDF-SFEKFSAKDLKDP 392
           G + I  R K  P  K+VNYNH   +    +  +F K    D+ DP
Sbjct: 28  GNHWIFARFKFYPLNKIVNYNHFHSSSCQSEAKNFYKQFEGDISDP 73


>SPAC1805.13 |rpl14||60S ribosomal protein L14|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 134

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 11/28 (39%), Positives = 18/28 (64%)
 Frame = +1

Query: 91  KIMKPGKVVLVLSGRYAGRKAIVVKNYD 174
           + ++ G+VVLV  G Y G+ A++V   D
Sbjct: 6   RYVEVGRVVLVTKGEYTGKLAVIVDIVD 33


>SPAC16A10.08c |mug74|SPAC589.01c|sequence
           orphan|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 285

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 13/31 (41%), Positives = 21/31 (67%)
 Frame = +3

Query: 201 GMPSSLVSTGTPGKVHKRMGKNKIHKRSKIK 293
           G P+SLVS+ T  K+H  +G+  I K S+++
Sbjct: 184 GSPTSLVSSNTASKLH--LGRKDIVKLSELR 212


>SPAC16E8.09 |scd1|ral1|RhoGEF Scd1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 872

 Score = 25.8 bits (54), Expect = 7.9
 Identities = 14/34 (41%), Positives = 19/34 (55%)
 Frame = -2

Query: 389 VFQVFCAKFFKAEVNCITCWHQVIVVYNLDERLY 288
           V+QVFC  F  A+   I   +Q++ V NL E  Y
Sbjct: 315 VYQVFCTNFPNAQQLIIDNQNQLLKVANLLEPSY 348


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,707
Number of Sequences: 5004
Number of extensions: 49076
Number of successful extensions: 147
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 145
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 430470850
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)