Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C20
(864 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0951 - 21769342-21769752 79 3e-15
02_02_0470 - 10700092-10700505 78 8e-15
02_04_0433 - 22891261-22891509,22892181-22892301,22892405-228924... 35 0.096
11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669 29 4.8
04_04_0211 - 23636377-23636532,23636624-23636805,23637853-236379... 29 6.3
09_01_0103 - 1628763-1628879,1641827-1642921,1645126-1645476,164... 28 8.4
>10_08_0951 - 21769342-21769752
Length = 136
Score = 79.4 bits (187), Expect = 3e-15
Identities = 37/87 (42%), Positives = 57/87 (65%), Gaps = 2/87 (2%)
Frame = +3
Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKRKKLR 413
P KV ++ K K+S++K F+K+VN+ HLMPTRYT+D ++ +A + KK+
Sbjct: 50 PKKVIRKDSAKKTAKKSRVKCFLKLVNFTHLMPTRYTLDVDLKEVAAGPDALATRDKKVA 109
Query: 414 F--NTRVRFEERYKSGKNKWFFQKLRF 488
+ + R E+R+K+GKN+WFF KLRF
Sbjct: 110 ACKSAKARLEDRFKTGKNRWFFTKLRF 136
Score = 52.4 bits (120), Expect = 4e-07
Identities = 21/42 (50%), Positives = 32/42 (76%)
Frame = +1
Query: 85 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSEQAIRACL 210
M K +KPGK V++L GR+AGRKA++V+ ++EGT ++ CL
Sbjct: 1 MVKFLKPGKAVILLQGRFAGRKAVIVRVFEEGTRDRPYGHCL 42
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 188 NKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 298
++PYGH VAG+ +YP+ ++D + ++ + K F
Sbjct: 35 DRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71
>02_02_0470 - 10700092-10700505
Length = 137
Score = 78.2 bits (184), Expect = 8e-15
Identities = 39/88 (44%), Positives = 57/88 (64%), Gaps = 3/88 (3%)
Frame = +3
Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEKFSAKDLKDPAKR-KKL 410
P KV ++ K K+S++K F+K+VN+ H+MPTRYT+D F+ ++ A R KK+
Sbjct: 50 PKKVIRKDSAKKTAKKSRVKCFLKLVNFTHIMPTRYTLDVDFKDVASGGPDALATRDKKV 109
Query: 411 RF--NTRVRFEERYKSGKNKWFFQKLRF 488
+ R EER+K+GKN+WFF KLRF
Sbjct: 110 AACKAAKARLEERFKTGKNRWFFTKLRF 137
Score = 54.0 bits (124), Expect = 1e-07
Identities = 22/42 (52%), Positives = 32/42 (76%)
Frame = +1
Query: 85 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSEQAIRACL 210
M K +KPGK V++L GRYAGRKA++V+ ++EGT ++ CL
Sbjct: 1 MVKFLKPGKAVILLQGRYAGRKAVIVRVFEEGTRDRPYGHCL 42
Score = 32.7 bits (71), Expect = 0.39
Identities = 12/37 (32%), Positives = 23/37 (62%)
Frame = +2
Query: 188 NKPYGHAFVAGIDRYPRXSAQEDGKE*NPQEVQDKAF 298
++PYGH VAG+ +YP+ ++D + ++ + K F
Sbjct: 35 DRPYGHCLVAGLAKYPKKVIRKDSAKKTAKKSRVKCF 71
>02_04_0433 -
22891261-22891509,22892181-22892301,22892405-22892496,
22892692-22892755,22892855-22892920,22893102-22893193,
22893991-22894050,22894181-22894270,22894484-22894613,
22895066-22895157,22895299-22895373,22895663-22895754,
22896496-22896586,22897541-22897574,22897745-22897791,
22899110-22899209,22899300-22899436,22900837-22901015,
22901146-22901188,22901264-22901297,22901839-22901948,
22902043-22902224,22903062-22903168,22903266-22903480
Length = 833
Score = 34.7 bits (76), Expect = 0.096
Identities = 12/35 (34%), Positives = 23/35 (65%)
Frame = +1
Query: 76 PSKMGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 180
P+K+ + PG V+++L+GRY G++ + +K G
Sbjct: 68 PTKLRSTITPGTVLILLAGRYMGKRVVFLKQLKSG 102
>11_05_0008 - 18335815-18336080,18340549-18340923,18342570-18342669
Length = 246
Score = 29.1 bits (62), Expect = 4.8
Identities = 24/78 (30%), Positives = 33/78 (42%), Gaps = 6/78 (7%)
Frame = +3
Query: 51 LCQRVKGISLQDGQNNEAG*SSAGPKWPVRGSQGY------RSQELRRRYLRTSHTGMPS 212
L RV + + +G A P+ V S GY R LRRR LRT+ TGM
Sbjct: 95 LTDRVAALETPSNEEVVSGDDDAHPEDTVYDSSGYIDALATRQARLRRR-LRTNRTGMGG 153
Query: 213 SLVSTGTPGKVHKRMGKN 266
+ GT + + K+
Sbjct: 154 TRHQQGTMEGTRRHLEKD 171
>04_04_0211 -
23636377-23636532,23636624-23636805,23637853-23637959,
23637997-23638280
Length = 242
Score = 28.7 bits (61), Expect = 6.3
Identities = 10/32 (31%), Positives = 20/32 (62%)
Frame = +1
Query: 85 MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEG 180
M + PG V+++L+GR+ G++ + +K G
Sbjct: 94 MRSSITPGTVLILLAGRFMGKRVVFLKQLKSG 125
>09_01_0103 -
1628763-1628879,1641827-1642921,1645126-1645476,
1645567-1645734
Length = 576
Score = 28.3 bits (60), Expect = 8.4
Identities = 13/27 (48%), Positives = 18/27 (66%)
Frame = -3
Query: 412 RSFLRFAGSFRSFALNFSKLKSTV*RV 332
RSFL AG +R F NFSK+ ++ R+
Sbjct: 453 RSFLGLAGYYRRFIENFSKIAKSMTRL 479
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,615,776
Number of Sequences: 37544
Number of extensions: 313077
Number of successful extensions: 804
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 783
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 802
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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