Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C20
         (864 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal prote...   112   4e-25
AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal pro...   112   4e-25
U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical pr...    33   0.26 
U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal prote...    29   3.2  
U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical p...    28   9.9  

>U89308-1|AAB48626.1|  136|Caenorhabditis elegans ribosomal protein
           L27 homolog protein.
          Length = 136

 Score =  112 bits (269), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +3

Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 407
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 408 LRFNTRVRFEERYKSGKNKWFFQKLRF 488
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +1

Query: 85  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSEQ 192
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG S++
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDR 36



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 188 NKPYGHAFVAGIDRYPRXSAQEDGKE 265
           ++ Y HA +AGIDRYP    ++ GK+
Sbjct: 35  DRTYPHAIIAGIDRYPLKVTKDMGKK 60


>AF003143-5|AAK68266.1|  136|Caenorhabditis elegans Ribosomal
           protein, large subunitprotein 27 protein.
          Length = 136

 Score =  112 bits (269), Expect = 4e-25
 Identities = 51/87 (58%), Positives = 67/87 (77%), Gaps = 2/87 (2%)
 Frame = +3

Query: 234 PGKVHKRMGKNKIHKRSKIKPFVKVVNYNHLMPTRYTVDFSFEK--FSAKDLKDPAKRKK 407
           P KV K MGK KI KR+K+KPF+KVV+Y HL+PTRY+VD +F+K   + + LK P+K++K
Sbjct: 50  PLKVTKDMGKKKIEKRNKLKPFLKVVSYTHLLPTRYSVDVAFDKTNINKEALKAPSKKRK 109

Query: 408 LRFNTRVRFEERYKSGKNKWFFQKLRF 488
                + +FEERYK+GKNKWFF KLRF
Sbjct: 110 ALVEVKSKFEERYKTGKNKWFFTKLRF 136



 Score = 62.5 bits (145), Expect = 4e-10
 Identities = 28/36 (77%), Positives = 32/36 (88%)
 Frame = +1

Query: 85  MGKIMKPGKVVLVLSGRYAGRKAIVVKNYDEGTSEQ 192
           MGKIMKPGKVVLVL G+YAGRKA+VVK  DEG S++
Sbjct: 1   MGKIMKPGKVVLVLRGKYAGRKAVVVKQQDEGVSDR 36



 Score = 31.5 bits (68), Expect = 0.80
 Identities = 12/26 (46%), Positives = 18/26 (69%)
 Frame = +2

Query: 188 NKPYGHAFVAGIDRYPRXSAQEDGKE 265
           ++ Y HA +AGIDRYP    ++ GK+
Sbjct: 35  DRTYPHAIIAGIDRYPLKVTKDMGKK 60


>U40028-4|AAA81115.1|  758|Caenorhabditis elegans Hypothetical
           protein T05A7.6 protein.
          Length = 758

 Score = 33.1 bits (72), Expect = 0.26
 Identities = 28/104 (26%), Positives = 47/104 (45%), Gaps = 1/104 (0%)
 Frame = +3

Query: 126 KWPVRGSQGYRSQELRRRYLRTSHTGMPSSLVSTGTPGKVHKRMGKNKIHKRSKIKPFVK 305
           K+ V G  G   +++RR+YL  S +   S  V+  T   +        +H+   IKP   
Sbjct: 521 KFVVMGLVGPSLEDIRRKYLLASFSKHTSFNVAIQTVTALRDLHSLGYLHR--DIKPANY 578

Query: 306 VVNYNHLMPTRYTVDFSFEK-FSAKDLKDPAKRKKLRFNTRVRF 434
            V  +    T Y +DF   K +  ++     KRKK++F   +R+
Sbjct: 579 AVGLDEREDTVYMLDFGIAKLYVDENGVHKIKRKKVKFLGTLRY 622


>U00036-4|AAK29850.1|  217|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 6 protein.
          Length = 217

 Score = 29.5 bits (63), Expect = 3.2
 Identities = 10/25 (40%), Positives = 19/25 (76%)
 Frame = +1

Query: 91  KIMKPGKVVLVLSGRYAGRKAIVVK 165
           K + PG V++VL+GR+ G++ + +K
Sbjct: 69  KTLTPGTVLIVLAGRHKGKRVVFLK 93


>U28991-12|AAA68386.2|  550|Caenorhabditis elegans Hypothetical
           protein F08F8.2 protein.
          Length = 550

 Score = 27.9 bits (59), Expect = 9.9
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = +1

Query: 103 PGKVVLVLSGRYAGRKAIVVKNYDEGTSEQAIRACL 210
           P   VL LSG     K    KN+ EG     +  CL
Sbjct: 307 PEMTVLALSGNLCVDKKAAAKNWTEGRGRSVVAECL 342


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,987,720
Number of Sequences: 27780
Number of extensions: 274258
Number of successful extensions: 690
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 662
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 688
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2160943708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)