Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C19
         (874 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_1061 - 22622805-22622961,22623262-22623441,22623482-226234...    30   2.8  
01_06_0620 + 30660025-30661440                                         29   6.4  
08_02_0883 + 22229278-22230009                                         28   8.5  

>10_08_1061 -
           22622805-22622961,22623262-22623441,22623482-22623489,
           22623682-22623845,22623969-22624134
          Length = 224

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 16/37 (43%), Positives = 21/37 (56%)
 Frame = -3

Query: 497 PGSGTHDLEMELRNAQPNARHPRKHFPGNPAQANGAT 387
           PG+     EMELR A  + +HP  H P +PA  +G T
Sbjct: 185 PGAAMLIDEMELRQA--DEQHPGVHAPQSPAAVSGVT 219


>01_06_0620 + 30660025-30661440
          Length = 471

 Score = 28.7 bits (61), Expect = 6.4
 Identities = 13/29 (44%), Positives = 17/29 (58%)
 Frame = -2

Query: 381 SLRTLKRPSAQTVVKGXCSGXXRNLPP*H 295
           S R+L+R +A  VV G C+   R  PP H
Sbjct: 214 SCRSLERRAADAVVAGLCTFPGRRTPPLH 242


>08_02_0883 + 22229278-22230009
          Length = 243

 Score = 28.3 bits (60), Expect = 8.5
 Identities = 18/54 (33%), Positives = 27/54 (50%), Gaps = 2/54 (3%)
 Frame = -3

Query: 443 ARHPRKHFPGNPAQANGATSHPCAX*NDLAHRQWLRAPAAGTXG--TCLRNMPA 288
           ARH  + FP N A A G++S        ++ RQ   APA  T    T + ++P+
Sbjct: 111 ARHANRPFPANTAAAGGSSSS-----YSISQRQEAAAPARSTSNDDTAMSSVPS 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,088,961
Number of Sequences: 37544
Number of extensions: 240204
Number of successful extensions: 634
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 625
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 634
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)