Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C18
         (931 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    32   0.13 
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    27   2.6  
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    27   2.8  
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    26   6.6  
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual    26   6.6  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 31.9 bits (69), Expect = 0.13
 Identities = 16/43 (37%), Positives = 16/43 (37%), Gaps = 1/43 (2%)
 Frame = +1

Query: 310 PPXGXPQTPXGXPXXKXXXXPXWX-PPXXPPPPXXCWXAPPPP 435
           PP     TP   P       P    PP  PPPP      PPPP
Sbjct: 736 PPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778



 Score = 27.9 bits (59), Expect = 2.2
 Identities = 14/49 (28%), Positives = 16/49 (32%)
 Frame = +1

Query: 328 QTPXGXPXXKXXXXPXWXPPXXPPPPXXCWXAPPPPXXXXXXXGGXKPP 474
           ++P   P       P   P   PPP       PPPP        G  PP
Sbjct: 730 KSPPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPP 778


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/43 (37%), Positives = 18/43 (41%)
 Frame = +1

Query: 370 PXWXPPXXPPPPXXCWXAPPPPXXXXXXXGGXKPPXGXXKKKK 498
           P   PP  PPPP     + PPP           PP G  KK+K
Sbjct: 5   PPGNPPPPPPPPGFEPPSQPPP----------PPPPGYVKKRK 37



 Score = 23.8 bits (49), Expect(2) = 2.6
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 552 PPPPPPP 572
           PPPPPPP
Sbjct: 24  PPPPPPP 30



 Score = 21.8 bits (44), Expect(2) = 2.6
 Identities = 10/22 (45%), Positives = 10/22 (45%)
 Frame = +3

Query: 369 PXLXAPXXPPPPXFXLXGPPPP 434
           P    P  PPPP F     PPP
Sbjct: 6   PGNPPP-PPPPPGFEPPSQPPP 26


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 27.5 bits (58), Expect = 2.8
 Identities = 20/88 (22%), Positives = 22/88 (25%)
 Frame = +1

Query: 307 SPPXGXPQTPXGXPXXKXXXXPXWXPPXXPPPPXXCWXAPPPPXXXXXXXGGXKPPXGXX 486
           S P   P  P   P  +        PP  PPP      +PP             P     
Sbjct: 228 SAPPIPPSIPSSRPPERVPSLSAPAPPPIPPPSNGTVSSPPNSPPRPIAPVSMNPAINST 287

Query: 487 KKKKKXXXXFFFFFXXXXXXKXPPPPPP 570
            K                  K  PPPPP
Sbjct: 288 SKPPLPPPSSRVSAAALAANKKRPPPPP 315


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = +3

Query: 369  PXLXAPXXPPPPXFXLXGPPPP 434
            P + AP  PPPP   +  PPPP
Sbjct: 1700 PQMSAPTPPPPP---MSVPPPP 1718


>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1611

 Score = 26.2 bits (55), Expect = 6.6
 Identities = 16/58 (27%), Positives = 17/58 (29%)
 Frame = +1

Query: 307  SPPXGXPQTPXGXPXXKXXXXPXWXPPXXPPPPXXCWXAPPPPXXXXXXXGGXKPPXG 480
            +PP   P      P       P   P   PP P     APP P          KP  G
Sbjct: 1130 APPVPVPSGAPPVPKPSVAAPPVPAPSGAPPVPKPSVAAPPVPAPSSGIPPVPKPAAG 1187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,151,748
Number of Sequences: 5004
Number of extensions: 13847
Number of successful extensions: 223
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 92
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 471335896
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)