Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C16
         (1159 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.          24   0.26 
AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like pr...    27   0.36 
AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless prot...    23   4.4  
AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    23   4.4  

>DQ342040-1|ABC69932.1|  822|Tribolium castaneum STIP protein.
          Length = 822

 Score = 23.8 bits (49), Expect(2) = 0.26
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 773 PPPPPPP 793
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 777 PPPPPPP 797
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +3

Query: 780 PPPPPPP 800
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +1

Query: 865 PPPPPPP 885
           PPPPPPP
Sbjct: 731 PPPPPPP 737



 Score = 21.4 bits (43), Expect(2) = 0.26
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +2

Query: 866 PPPPPPPFXXF 898
           PPPPPP    F
Sbjct: 732 PPPPPPRVESF 742


>AF356647-1|AAK43700.1| 1156|Tribolium castaneum teashirt-like
           protein protein.
          Length = 1156

 Score = 26.6 bits (56), Expect = 0.36
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = -1

Query: 799 GGGGGGGGGXXXPPPPP 749
           GGGGG G G   PP  P
Sbjct: 524 GGGGGSGSGNNQPPGGP 540



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/17 (52%), Positives = 9/17 (52%)
 Frame = -1

Query: 796 GGGGGGGGXXXPPPPPP 746
           GGGGG G     PP  P
Sbjct: 524 GGGGGSGSGNNQPPGGP 540


>AF225975-2|AAF74116.1|  302|Tribolium castaneum Tc-tailless
           protein.
          Length = 302

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 402 PLFFXXXPPPPPXXFFSXXGXPPPHTPPXP 491
           P      P  PP  F      P P  PP P
Sbjct: 155 PSIIDPGPALPPAGFLCNNYLPLPQVPPLP 184


>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 23.0 bits (47), Expect = 4.4
 Identities = 10/30 (33%), Positives = 10/30 (33%)
 Frame = +3

Query: 402 PLFFXXXPPPPPXXFFSXXGXPPPHTPPXP 491
           P      P  PP  F      P P  PP P
Sbjct: 155 PSIIDPGPALPPTGFLCNNYPPLPQVPPLP 184


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,392
Number of Sequences: 336
Number of extensions: 3696
Number of successful extensions: 32
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 122,585
effective HSP length: 58
effective length of database: 103,097
effective search space used: 33712719
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)