Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C16
         (1159 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||...    34   0.043
SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit Spp42|Schizosac...    32   0.17 
SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein Cap1|S...    30   0.53 
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1...    30   0.70 
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ...    29   0.93 
SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.93 
SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, wit...    28   2.8  
SPBC660.06 |||conserved fungal protein|Schizosaccharomyces pombe...    28   2.8  
SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr 2...    27   6.5  
SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces...    27   6.5  

>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 1461

 Score = 33.9 bits (74), Expect = 0.043
 Identities = 16/50 (32%), Positives = 16/50 (32%)
 Frame = +2

Query: 776 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPPPFXXFXXKXXXPPP 925
           PPPPPP                        PPPPPPP          PPP
Sbjct: 732 PPPPPPAVIVPTPAPAPIPVPPPAPIMGGPPPPPPPPGVAGAGPPPPPPP 781



 Score = 30.3 bits (65), Expect = 0.53
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 399 PPLFFXXXPPPPPXXFFSXXGXPPPHTPPXP 491
           PP      PPPPP         PPP  PP P
Sbjct: 753 PPAPIMGGPPPPPPPPGVAGAGPPPPPPPPP 783



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 13/25 (52%), Positives = 13/25 (52%)
 Frame = +3

Query: 726 PXXXXXXGGGGGGXXXPPPPPPPPP 800
           P      G  G G   PPPPPPPPP
Sbjct: 762 PPPPPPPGVAGAG---PPPPPPPPP 783



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 773 PPPPPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPPP 886
           PPPPPPPP                       PPPPPPP
Sbjct: 761 PPPPPPPPGVAGAGPP---------------PPPPPPP 783



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 865 PPPPPPPFXXFXXXXXXPPP 924
           PPPPPPP          PPP
Sbjct: 761 PPPPPPPPGVAGAGPPPPPP 780



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 777 PPPPPPPP 800
           PPPPPPPP
Sbjct: 761 PPPPPPPP 768


>SPAC4F8.12c |spp42|cwf6|U5 snRNP complex subunit
           Spp42|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2363

 Score = 31.9 bits (69), Expect = 0.17
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +3

Query: 423 PPPPPXXFFSXXGXPPPHTPPXPXXXXKKK 512
           PPPPP   F     PPP  PP P    K+K
Sbjct: 10  PPPPPPPGFEPPSQPPP--PPPPGYVKKRK 37



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 15/38 (39%), Positives = 15/38 (39%)
 Frame = +2

Query: 773 PPPPPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPPP 886
           PPPPPPPP                       PPPPPPP
Sbjct: 9   PPPPPPPP----------------GFEPPSQPPPPPPP 30



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 11/20 (55%), Positives = 11/20 (55%)
 Frame = +1

Query: 865 PPPPPPPFXXFXXXXXXPPP 924
           PPPPPPP   F      PPP
Sbjct: 9   PPPPPPP-PGFEPPSQPPPP 27



 Score = 27.1 bits (57), Expect = 5.0
 Identities = 10/20 (50%), Positives = 11/20 (55%)
 Frame = +2

Query: 866 PPPPPPPFXXFXXKXXXPPP 925
           PPPPPPP      +   PPP
Sbjct: 10  PPPPPPPGFEPPSQPPPPPP 29



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 777 PPPPPPPP 800
           PPPPPPPP
Sbjct: 9   PPPPPPPP 16



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 865 PPPPPPPFXXFXXXXXXPPP 924
           PPPPPP F         PPP
Sbjct: 11  PPPPPPGFEPPSQPPPPPPP 30



 Score = 24.2 bits (50), Expect(2) = 2.0
 Identities = 9/11 (81%), Positives = 9/11 (81%), Gaps = 2/11 (18%)
 Frame = +3

Query: 774 PP--PPPPPPP 800
           PP  PPPPPPP
Sbjct: 20  PPSQPPPPPPP 30



 Score = 22.2 bits (45), Expect(2) = 2.0
 Identities = 7/10 (70%), Positives = 7/10 (70%)
 Frame = +3

Query: 762 GXXXPPPPPP 791
           G   PPPPPP
Sbjct: 7   GNPPPPPPPP 16


>SPCC306.09c |cap1|cap|adenylyl cyclase-associated protein
           Cap1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 551

 Score = 30.3 bits (65), Expect = 0.53
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +3

Query: 750 GGGGGXXXPPPPPPPPP 800
           G       PPPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 29.9 bits (64), Expect = 0.70
 Identities = 10/17 (58%), Positives = 10/17 (58%)
 Frame = +2

Query: 746 GGGGGGXXXPPPPPPPP 796
           G    G   PPPPPPPP
Sbjct: 298 GDSANGGLPPPPPPPPP 314



 Score = 27.5 bits (58), Expect = 3.7
 Identities = 10/20 (50%), Positives = 10/20 (50%)
 Frame = +1

Query: 865 PPPPPPPFXXFXXXXXXPPP 924
           PPPPPPP   F      P P
Sbjct: 308 PPPPPPPSNDFWKDSNEPAP 327



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = -1

Query: 793 GGGGGGGXXXPPPPPP 746
           G    GG   PPPPPP
Sbjct: 298 GDSANGGLPPPPPPPP 313


>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 574

 Score = 29.9 bits (64), Expect = 0.70
 Identities = 16/49 (32%), Positives = 16/49 (32%)
 Frame = +2

Query: 776 PPPPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPPPFXXFXXKXXXPP 922
           PPPPPPP                       PPPPPPP          PP
Sbjct: 311 PPPPPPPSRRNRGKPPIGNGSSNSSL----PPPPPPPRSNAAGSIPLPP 355



 Score = 28.3 bits (60), Expect = 2.1
 Identities = 15/46 (32%), Positives = 15/46 (32%)
 Frame = +2

Query: 746 GGGGGGXXXPPPPPPPPXXXXXXXXXXXXXXXXXXXXXXXPPPPPP 883
           G G      PPPPPPP                        PPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP-------RSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 26.2 bits (55), Expect(2) = 1.4
 Identities = 9/16 (56%), Positives = 9/16 (56%)
 Frame = +3

Query: 750 GGGGGXXXPPPPPPPP 797
           G G      PPPPPPP
Sbjct: 328 GNGSSNSSLPPPPPPP 343



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 11/28 (39%), Positives = 11/28 (39%)
 Frame = +2

Query: 353 PPPPXXXGXXFFFXXPPPFFXXXPPPPP 436
           PPPP           PP      PPPPP
Sbjct: 339 PPPPPRSNAAGSIPLPPQGRSAPPPPPP 366



 Score = 21.0 bits (42), Expect(2) = 1.4
 Identities = 6/6 (100%), Positives = 6/6 (100%)
 Frame = +3

Query: 783 PPPPPP 800
           PPPPPP
Sbjct: 361 PPPPPP 366


>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1420

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 774 PPPPPPPPP 800
           PPPPPPPPP
Sbjct: 189 PPPPPPPPP 197



 Score = 26.2 bits (55), Expect = 8.7
 Identities = 8/9 (88%), Positives = 8/9 (88%)
 Frame = +3

Query: 774 PPPPPPPPP 800
           P PPPPPPP
Sbjct: 236 PAPPPPPPP 244


>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1841

 Score = 29.5 bits (63), Expect = 0.93
 Identities = 9/9 (100%), Positives = 9/9 (100%)
 Frame = +3

Query: 774 PPPPPPPPP 800
           PPPPPPPPP
Sbjct: 945 PPPPPPPPP 953


>SPAC25G10.09c ||SPAC27F1.01c|actin cortical patch component, with EF
            hand and WH2 motif |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1794

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 13/31 (41%), Positives = 13/31 (41%)
 Frame = +3

Query: 399  PPLFFXXXPPPPPXXFFSXXGXPPPHTPPXP 491
            PP      PPPPP         PPP  PP P
Sbjct: 1699 PPQMSAPTPPPPPMSV-----PPPPSAPPMP 1724


>SPBC660.06 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 273

 Score = 27.9 bits (59), Expect = 2.8
 Identities = 11/17 (64%), Positives = 11/17 (64%)
 Frame = -1

Query: 799 GGGGGGGGGXXXPPPPP 749
           GG GG GGG   PPP P
Sbjct: 188 GGFGGFGGGSGGPPPGP 204


>SPBC146.13c |myo1||myosin type I|Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1217

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 774  PPPPPPPP 797
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 777  PPPPPPPP 800
            PPPPPPPP
Sbjct: 1095 PPPPPPPP 1102


>SPBC13E7.03c |||RNA hairpin binding protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 713

 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 774 PPPPPPPP 797
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377



 Score = 26.6 bits (56), Expect = 6.5
 Identities = 8/8 (100%), Positives = 8/8 (100%)
 Frame = +3

Query: 777 PPPPPPPP 800
           PPPPPPPP
Sbjct: 370 PPPPPPPP 377


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,452,694
Number of Sequences: 5004
Number of extensions: 38268
Number of successful extensions: 565
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 74
effective length of database: 1,992,182
effective search space used: 619568602
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)