Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C15
         (861 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1805.06c |hem2||porphobilinogen synthase Hem2 |Schizosacchar...   211   1e-55
SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual    30   0.49 
SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated |Schizosaccharom...    29   0.85 
SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces ...    27   3.4  
SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr 1||...    27   4.5  
SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|c...    26   6.0  
SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subun...    26   6.0  

>SPAC1805.06c |hem2||porphobilinogen synthase Hem2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 329

 Score =  211 bits (515), Expect = 1e-55
 Identities = 101/202 (50%), Positives = 145/202 (71%)
 Frame = +2

Query: 179 VLQGGYHHAALRKLQEPNTSIEPHNIMYPVFLIEKDNAIEPVHSMPNVNRYGVDQLIPLL 358
           +L  GY +  LR+ Q     I   ++MYP+F+ E D+A E + SMPN  R+GV++L   L
Sbjct: 8   LLHAGYSNPLLREWQGVRP-ITKSSLMYPIFISEIDDAKEAIDSMPNQFRWGVNRLEEFL 66

Query: 359 AELVEKGLKSILIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCP 538
             LV+KGL+S+++FG++E+  KD  G+ ADS + PVIKA+ ++R  FP+L++ACDVCLC 
Sbjct: 67  GPLVKKGLRSVILFGVIES-KKDYCGSMADSENGPVIKAVKEIRHLFPELVVACDVCLCE 125

Query: 539 YTSHGHCGLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRN 718
           YT HGHCGLL   G I++  SV+RIAEV+  YA AGA +++PSD MD R+KAIK++LV  
Sbjct: 126 YTDHGHCGLLYEDGTINNAKSVERIAEVSGNYALAGAQIISPSDCMDGRVKAIKQKLVEL 185

Query: 719 KLQNQVSILSYSCKFASSMYGP 784
           +L ++V ++SYS KFAS  +GP
Sbjct: 186 ELSHKVCVISYSAKFASGFFGP 207


>SPAPB1E7.04c |||chitinase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1236

 Score = 29.9 bits (64), Expect = 0.49
 Identities = 25/91 (27%), Positives = 42/91 (46%), Gaps = 2/91 (2%)
 Frame = -1

Query: 468 ITGLSTESALVPVGSL--GSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGS 295
           I+  S  S    V S+   S S+    S+ +S  STSS     S S+P   +  I  + S
Sbjct: 564 ISSSSIPSTFSSVSSILSSSTSSPSSTSLSISSSSTSSTFSSASTSSPSSISSSIS-SSS 622

Query: 294 IALSFSIKNTGYIILCGSMLVFGSCNFLKAA 202
             LS    +T  +++  S ++ GS + L ++
Sbjct: 623 TILSSPTPSTSSLMISSSSIISGSSSILSSS 653


>SPCC1393.04 |fta4|sma6|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 233

 Score = 29.1 bits (62), Expect = 0.85
 Identities = 21/63 (33%), Positives = 34/63 (53%), Gaps = 2/63 (3%)
 Frame = +2

Query: 137 ETKIMSNLYLTPEHVLQGGYHHAA-LRKLQEPNTSIEPHNIMYPVFLIEKD-NAIEPVHS 310
           + +I  +  L   H  Q   H AA +RKL E N++IE    + P+F  E D + ++ V S
Sbjct: 50  QLRIQKHAKLNYSH--QATQHVAAQIRKLYEQNSAIEDITFLNPLFYGEIDLSNLDSVKS 107

Query: 311 MPN 319
           +P+
Sbjct: 108 LPH 110


>SPAC1687.04 |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 501

 Score = 27.1 bits (57), Expect = 3.4
 Identities = 10/18 (55%), Positives = 13/18 (72%)
 Frame = +3

Query: 219 YRNRTQASNRTILCILCF 272
           Y NR QASN T +C+ C+
Sbjct: 160 YSNRLQASNDTGVCVKCY 177


>SPAC4F10.11 |spn1||septin Spn1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 469

 Score = 26.6 bits (56), Expect = 4.5
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = -2

Query: 596 LHGRYLLHSSVS-HNVRVMCKDINIHHMLLTNQERQHAISAM 474
           + GRY  +  +  HN R   +D  +H  +   Q   HAISAM
Sbjct: 183 IEGRYDQYLELEKHNPRSTIQDPRVHACIFFIQPTGHAISAM 224


>SPBC1683.05 |||thiamine transporter |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 559

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 17/52 (32%), Positives = 24/52 (46%)
 Frame = -1

Query: 324 FTFGIL*TGSIALSFSIKNTGYIILCGSMLVFGSCNFLKAA*WYPPCSTCSG 169
           F F ++    +   F IK+    I C +ML+F  CN      W  P +T SG
Sbjct: 210 FPFHLIRPEYLQRFFLIKSISTYIACFAMLIFLLCNVGSHVVWDQP-ATVSG 260


>SPAC4G9.08c |rpc2||DNA-directed RNA polymerase III complex subunit
            Rpc2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1165

 Score = 26.2 bits (55), Expect = 6.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +2

Query: 515  ACDVCLCPYTSHGHCGLLKSGGGIDHEASVKRIAEVALAYA 637
            ACDV +C     G CGLL   G  +   S + + ++ + YA
Sbjct: 1105 ACDVDVC-----GQCGLLGYKGWCNSCQSTREVVKMTIPYA 1140


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,378,658
Number of Sequences: 5004
Number of extensions: 71672
Number of successful extensions: 216
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 208
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 215
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 428468660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)