Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C15
(861 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1311 - 29241884-29242054,29242802-29242879,29242968-292430... 116 2e-26
04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196 30 2.7
10_08_0680 - 19846481-19846767,19847192-19847379,19847467-198476... 29 6.3
03_05_0456 - 24498212-24499581,24502660-24503071 29 6.3
02_01_0168 + 1162447-1162866,1162940-1163317,1163606-1163829,116... 29 6.3
11_06_0313 + 22306497-22308938 28 8.3
11_04_0019 + 12311674-12311886,12312746-12312878,12312918-123131... 28 8.3
11_02_0103 - 8320207-8320443,8320540-8320593,8321055-8321162,832... 28 8.3
04_04_0988 - 29941838-29941889,29942113-29942239,29942345-299423... 28 8.3
04_03_0744 + 19237901-19237912,19238119-19238611,19238860-192389... 28 8.3
02_05_1234 - 35127322-35128378,35128423-35128467,35130016-351302... 28 8.3
>06_03_1311 -
29241884-29242054,29242802-29242879,29242968-29243049,
29243141-29243212,29243316-29243437,29243541-29243596,
29244264-29244333,29244435-29244518,29244599-29244667,
29244855-29244928,29245014-29245125,29245220-29245510
Length = 426
Score = 116 bits (279), Expect = 2e-26
Identities = 68/186 (36%), Positives = 113/186 (60%), Gaps = 2/186 (1%)
Frame = +2
Query: 233 TSIEPHNIMYPVFLIE-KDNAIEPVHSMPNVNRYGVDQ-LIPLLAELVEKGLKSILIFGI 406
T+I P N++ P+F+ E +D+A P+ +MP R G L+ + + + G+ S ++F
Sbjct: 119 TTISPANLVLPLFIHEGEDDA--PIGAMPGCYRLGWRHGLLDEVYKSRDVGVNSFVLFPK 176
Query: 407 VETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGHCGLLKSGGGI 586
V K +G A + + V + + L+ FPD+++ DV L PY+S GH G+++ G I
Sbjct: 177 VPDALKSQSGDEAYNDNGLVPRTIRLLKDKFPDIVVYTDVALDPYSSDGHDGIVREDGVI 236
Query: 587 DHEASVKRIAEVALAYAKAGAHVVAPSDMMDNRIKAIKEELVRNKLQNQVSILSYSCKFA 766
++ +V ++ + A++ A+AGA VV+PSDMMD R+ AI+ L + VSI+SY+ K+A
Sbjct: 237 MNDETVYQLCKQAVSQARAGADVVSPSDMMDGRVGAIRAALDAEGF-HDVSIMSYTAKYA 295
Query: 767 SSMYGP 784
SS YGP
Sbjct: 296 SSFYGP 301
>04_04_0196 - 23496899-23496903,23497758-23497994,23498106-23498196
Length = 110
Score = 29.9 bits (64), Expect = 2.7
Identities = 14/59 (23%), Positives = 30/59 (50%)
Frame = -1
Query: 378 PFSTSSAKRGMSWSTPYLFTFGIL*TGSIALSFSIKNTGYIILCGSMLVFGSCNFLKAA 202
P + + G W+ ++ +G ++L++S+ G++ G MLVF + L++A
Sbjct: 22 PKHAAIVRSGTEWTAAAHVITAVIGSGVLSLAWSVAQLGWLAGPGMMLVFAAVTALQSA 80
>10_08_0680 -
19846481-19846767,19847192-19847379,19847467-19847666,
19847799-19848060,19848652-19848758
Length = 347
Score = 28.7 bits (61), Expect = 6.3
Identities = 11/22 (50%), Positives = 14/22 (63%), Gaps = 1/22 (4%)
Frame = +3
Query: 708 WSEINCKTKCRY-CLTRVSSHR 770
W E NCK++CRY C+ S R
Sbjct: 79 WKEWNCKSECRYHCMMERESER 100
>03_05_0456 - 24498212-24499581,24502660-24503071
Length = 593
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/63 (30%), Positives = 31/63 (49%), Gaps = 1/63 (1%)
Frame = -1
Query: 492 ARNFGNAFITGLSTESALVPVGSLGSVSTIPKMSIDL-SPFSTSSAKRGMSWSTPYLFTF 316
AR+ + ++ +AL ++ +P ID +PFS + A RGM W+ Y+ F
Sbjct: 297 ARDIPVGLVGAMALTTALYCALAVTLCLMVPYGEIDPDAPFSVAFADRGMGWA-KYVVAF 355
Query: 315 GIL 307
G L
Sbjct: 356 GAL 358
>02_01_0168 +
1162447-1162866,1162940-1163317,1163606-1163829,
1163929-1163992,1164521-1164717,1164849-1165062
Length = 498
Score = 28.7 bits (61), Expect = 6.3
Identities = 19/66 (28%), Positives = 32/66 (48%)
Frame = +2
Query: 392 LIFGIVETLPKDPTGTSADSVDNPVIKALPKLRAAFPDLLIACDVCLCPYTSHGHCGLLK 571
L+ + ETL KD D+V+ +P ++ A P ++CD+C+ + + LLK
Sbjct: 249 LLLALAETLRKD----DFDNVEAITSARVPIVKIADPGSGLSCDICVNNLFAVANTKLLK 304
Query: 572 SGGGID 589
ID
Sbjct: 305 DYAQID 310
>11_06_0313 + 22306497-22308938
Length = 813
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/55 (29%), Positives = 29/55 (52%)
Frame = -1
Query: 579 PPLFSKPQCPCDV*GHKHTSHAINKSGKAARNFGNAFITGLSTESALVPVGSLGS 415
PP+F+ P P D ++ +A++ +G A N G A TG+ + + G++ S
Sbjct: 70 PPMFASPAAPAD--PNQRQPYAVHLNGAAPAN-GTANNTGVIPDLQIAVAGTVES 121
>11_04_0019 +
12311674-12311886,12312746-12312878,12312918-12313125,
12313342-12313558,12313564-12313848
Length = 351
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/36 (44%), Positives = 20/36 (55%)
Frame = -2
Query: 629 PMRLQLSSLPMLHGRYLLHSSVSHNVRVMCKDINIH 522
PMRLQL S P++ GR L S+ N+ V I H
Sbjct: 204 PMRLQLPSTPLILGRPFL-STARANIDVGTGSIRFH 238
>11_02_0103 -
8320207-8320443,8320540-8320593,8321055-8321162,
8321406-8321551,8321697-8321892,8323312-8323533
Length = 320
Score = 28.3 bits (60), Expect = 8.3
Identities = 16/46 (34%), Positives = 25/46 (54%)
Frame = -1
Query: 465 TGLSTESALVPVGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPY 328
+GL + ALV +G +P+ +I L+P S S +RG+ PY
Sbjct: 83 SGLQDQVALVSIGGWSPNQGVPQPAIILNP-SFSRHRRGLCPGRPY 127
>04_04_0988 -
29941838-29941889,29942113-29942239,29942345-29942392,
29943014-29943088,29943178-29943241,29943316-29943469,
29943721-29943924,29944002-29944190,29944283-29944488,
29944666-29944760,29944846-29944968,29945274-29945322,
29945709-29945780
Length = 485
Score = 28.3 bits (60), Expect = 8.3
Identities = 25/112 (22%), Positives = 44/112 (39%)
Frame = -1
Query: 612 ILFTDASWSIPPPLFSKPQCPCDV*GHKHTSHAINKSGKAARNFGNAFITGLSTESALVP 433
+L ++ W P S CP + S + S + + N F S+L+
Sbjct: 152 LLLSNILWKTPDRSISHDTCPLTIYVASSISANVRNSLGSGSQYANGFAAADIERSSLIL 211
Query: 432 VGSLGSVSTIPKMSIDLSPFSTSSAKRGMSWSTPYLFTFGIL*TGSIALSFS 277
G + S + K ++ SA+ G+ + +L +FG GS L F+
Sbjct: 212 CGKAFADSAMLKGALSALTAPVLSARGGLPF-PGWLLSFG----GSAVLLFA 258
>04_03_0744 +
19237901-19237912,19238119-19238611,19238860-19238928,
19239124-19239140,19239260-19239357,19240019-19240156,
19240710-19240899,19241175-19241307,19241505-19242442
Length = 695
Score = 28.3 bits (60), Expect = 8.3
Identities = 12/25 (48%), Positives = 16/25 (64%)
Frame = -3
Query: 799 IVSRXRSVHRRCELTRVRQYRHLVL 725
I+SR R +HRRC R R+ R +L
Sbjct: 21 ILSRARQIHRRCRRRRPRRRRRRLL 45
>02_05_1234 -
35127322-35128378,35128423-35128467,35130016-35130275,
35130610-35131365,35132115-35132122,35133559-35134327
Length = 964
Score = 28.3 bits (60), Expect = 8.3
Identities = 20/68 (29%), Positives = 34/68 (50%), Gaps = 5/68 (7%)
Frame = +2
Query: 536 PYTSHGH----CGLLKSGGGIDHEASVKRIAEVALAYAKAGAHVVAPSDMMDNR-IKAIK 700
P SH H C L G + E S+K ++ +A H VA D++D++ + A +
Sbjct: 242 PRQSHNHERKECSLSGLQGSQNGEDSMKPVSISDVATTSTNDHTVAHGDIIDDQSMDADE 301
Query: 701 EELVRNKL 724
+++VR L
Sbjct: 302 KKVVRKSL 309
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 22,075,128
Number of Sequences: 37544
Number of extensions: 461178
Number of successful extensions: 1220
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1219
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2409218220
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -