Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C13
         (867 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.07 |||translation initiation factor eIF4A|Schizosacchar...    28   1.5  
SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pomb...    28   2.0  
SPAC1834.01 |sup45||translation release factor eRF1|Schizosaccha...    27   2.6  
SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subuni...    26   8.0  

>SPAC1006.07 |||translation initiation factor
           eIF4A|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 392

 Score = 28.3 bits (60), Expect = 1.5
 Identities = 9/21 (42%), Positives = 17/21 (80%)
 Frame = +1

Query: 343 AIDLLTNDECRLLLEVEDFFN 405
           +I+ +TND+ R++ E+E F+N
Sbjct: 358 SINFVTNDDVRMMREIEQFYN 378


>SPBC27B12.08 |||AP-1 accessory protein |Schizosaccharomyces pombe|chr
            2|||Manual
          Length = 1919

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 19/70 (27%), Positives = 30/70 (42%)
 Frame = +1

Query: 220  SSSXFTKXQHH*PSIPLDFYSHSWN*IITTMXAXQKXSWAAAIDLLTNDECRLLLEVEDF 399
            + + FT+ Q   P I L+ Y  SW  I  ++             +L+ DE   L E + F
Sbjct: 1431 ADTSFTRVQSINPKILLNIYEKSWLNIAESLTILLSTDANLIYGILSGDELS-LSEEDVF 1489

Query: 400  FNDDCDLLKN 429
            F D+ +   N
Sbjct: 1490 FQDNINYASN 1499


>SPAC1834.01 |sup45||translation release factor
           eRF1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 433

 Score = 27.5 bits (58), Expect = 2.6
 Identities = 12/30 (40%), Positives = 16/30 (53%)
 Frame = +2

Query: 476 STRHHRRS*NQVPPNSLTIFCSS*TVNANK 565
           STR   +  N+VP N L I+C    +  NK
Sbjct: 74  STRERLKLYNKVPDNGLVIYCGEVIMEGNK 103


>SPBC25H2.13c |cdc20|pol2|DNA polymerase epsilon catalytic subunit a
           Pol2 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2199

 Score = 25.8 bits (54), Expect = 8.0
 Identities = 14/41 (34%), Positives = 21/41 (51%)
 Frame = +1

Query: 598 VDLPSIFENISEVPERVDPQPPGSGSSFKSFCDLGXPLKNC 720
           +D+ S++ NI  +  R+ P       SF + CDL  P K C
Sbjct: 625 LDVASMYPNIM-ITNRLQPDSV-KDESFCATCDLNVPNKTC 663


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,707,615
Number of Sequences: 5004
Number of extensions: 47652
Number of successful extensions: 125
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 123
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 125
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 432473040
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)