Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C12
(883 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|... 43 5e-05
SPBC354.05c |sre2||membrane-tethered transcription factor |Schiz... 29 0.88
SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr 1|||M... 29 1.2
SPBC13G1.08c |ash2||Ash2-trithorax family protein|Schizosaccharo... 28 2.0
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 27 3.5
SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8 |Schizosaccha... 27 4.7
SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal binuc... 26 6.2
SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family ... 26 8.2
>SPBC14F5.13c |||alkaline phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 532
Score = 43.2 bits (97), Expect = 5e-05
Identities = 38/132 (28%), Positives = 59/132 (44%)
Frame = +2
Query: 332 ILFIGDGMSLATVMAARTYAGQLDRGLGEENILEFEKFPVTGLARTYCLDAQVPDSACTA 511
I+ + DGM ++ R++ L+ G L+ + G +RT + + DSA A
Sbjct: 63 IMMVSDGMGPGSLSMTRSFVETLNDKEGYRLPLDEH---LIGSSRTRSSSSLITDSAAGA 119
Query: 512 TSYLTGVKTKYGVIGLDGNVTRGSCHSQLHKGNWAPSIGQWAIENGLDVGLVTTTRVTHA 691
T++ KT G +G+ N C + L A E G G+V T+RVT A
Sbjct: 120 TAFSCANKTYNGAVGVLDN--EKPCGTILEA----------AKEAGYLTGIVVTSRVTDA 167
Query: 692 SPAGMYAHVSER 727
+PA AH + R
Sbjct: 168 TPASFSAHAANR 179
>SPBC354.05c |sre2||membrane-tethered transcription factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 793
Score = 29.1 bits (62), Expect = 0.88
Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)
Frame = +2
Query: 476 LDAQVPDSACTATSYL-TGVKTKYGVIGLDGNVTRGSCHSQLHKGNWAPSIGQWAIENGL 652
L+ V D A + + + + T+ G + + T+ HS+ + +W PSI + ++N L
Sbjct: 96 LNQDVADKPMLARNSIDSSINTELGPLESNHWFTQAQDHSRQYSSSWDPSIDPFEVKNSL 155
Query: 653 DVGLVTTTRVTH 688
T +TH
Sbjct: 156 HDS--TDLSITH 165
>SPAC22G7.04 |ubp13|pan2|poly|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1115
Score = 28.7 bits (61), Expect = 1.2
Identities = 15/40 (37%), Positives = 23/40 (57%)
Frame = +2
Query: 533 KTKYGVIGLDGNVTRGSCHSQLHKGNWAPSIGQWAIENGL 652
KTKY GL+ ++T C+S L ++ PS + AI + L
Sbjct: 496 KTKYA--GLETDITNSYCNSVLQLLSYVPSFSKAAISHSL 533
>SPBC13G1.08c |ash2||Ash2-trithorax family
protein|Schizosaccharomyces pombe|chr 2|||Manual
Length = 652
Score = 27.9 bits (59), Expect = 2.0
Identities = 13/48 (27%), Positives = 28/48 (58%), Gaps = 1/48 (2%)
Frame = -2
Query: 831 DLEMSPWXSMTSWYAMSRQPRVRHSAGISTSDSQF-LSET*AYMPAGE 691
++E+ P+ S +W+ +S + HSA +T + F ++ + +M +GE
Sbjct: 342 EIELPPFTSRINWHDISTPVFIDHSALCATVEKGFRMARSNVFMTSGE 389
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 27.1 bits (57), Expect = 3.5
Identities = 12/30 (40%), Positives = 20/30 (66%)
Frame = -2
Query: 180 VVAASSWQMTCVTICKAISTVGHMIAGIAG 91
V+ +++TCVT+CKA S + ++G AG
Sbjct: 2337 VLYGHRYRITCVTVCKAFSII---VSGDAG 2363
>SPBC543.06c |dbp8||ATP-dependent RNA helicase Dbp8
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 453
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 1/84 (1%)
Frame = -2
Query: 750 ISTSDSQFLSET*AYMPAGEACVTLVVVTKPTSNPFSMAHCPIDGAQFPLWSWE*HDPRV 571
+S + + L + + +PA E TL+ T + + P + PLW +E +
Sbjct: 166 LSPTFADDLDDCFSVLPASEDRQTLLFTATVTDAIRQLKYQPQKNNKPPLWLYEVETDNI 225
Query: 570 TFPSKPITPYL-VFTPVRYEVAVH 502
+ PS Y+ V + VR VH
Sbjct: 226 SVPSTLQQSYIFVSSQVREAYLVH 249
>SPAC25B8.19c ||SPAC683.01c|transcription factor, zf-fungal
binuclear cluster type |Schizosaccharomyces pombe|chr
1|||Manual
Length = 522
Score = 26.2 bits (55), Expect = 6.2
Identities = 16/47 (34%), Positives = 22/47 (46%), Gaps = 1/47 (2%)
Frame = +2
Query: 617 PSIGQWAIENGLDVGLVTTTRVTHAS-PAGMYAHVSERNWESDVDIP 754
PSI + EN L TT+ + + PA Y HV + VD+P
Sbjct: 7 PSINRRNNENPPQSSLPTTSGIVYNMFPACPYPHVQNPAFHGSVDVP 53
>SPAC16E8.01 |||cytoskeletal protein binding protein Sla1 family
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1420
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/46 (32%), Positives = 19/46 (41%)
Frame = -3
Query: 863 GRNFRLPPPKMTLKCLPGYP*RAGTRCPGSQGSGILLVYQRPTPNS 726
G +PPP T P P A TR G+ S P+P+S
Sbjct: 267 GSQVNIPPPPATPSQPPRPPTNASTRSTGTSSSMAHSYDSPPSPSS 312
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,838,907
Number of Sequences: 5004
Number of extensions: 84888
Number of successful extensions: 195
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 187
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 195
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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