Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C12
         (883 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.               23   4.9  
DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.          23   4.9  
AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive...    23   4.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    22   8.6  
AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    22   8.6  
AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cycl...    22   8.6  

>DQ342041-1|ABC69933.1|  828|Apis mellifera STIP protein.
          Length = 828

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 608 NWAPSIGQWAIENGLDV 658
           +W P +  W +EN LD+
Sbjct: 501 HWMPLLPNWILENILDM 517


>DQ071552-1|AAY82248.1|  495|Apis mellifera anarchy 1 protein.
          Length = 495

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/46 (30%), Positives = 20/46 (43%), Gaps = 3/46 (6%)
 Frame = +2

Query: 446 PVTGLART---YCLDAQVPDSACTATSYLTGVKTKYGVIGLDGNVT 574
           P TG+  T   YC+D +VP S    + Y  G      + G+    T
Sbjct: 314 PGTGINVTLKGYCIDMEVPYSGTLISHYEDGETKSRFISGIRSEQT 359


>AF004169-1|AAC13418.1|  371|Apis mellifera ultraviolet-sensitive
           opsin protein.
          Length = 371

 Score = 22.6 bits (46), Expect = 4.9
 Identities = 14/55 (25%), Positives = 27/55 (49%)
 Frame = +2

Query: 59  RVYTXSVRRQRPAIPAIMWPTVLIALQIVTHVICHEDAATTPKPKKVLETVMNPA 223
           R++  ++      IP I+   +    QIV+HV+ HE A      K  ++++ + A
Sbjct: 209 RIFVATIFTFSYCIPMIL--IIYYYSQIVSHVVNHEKALREQAKKMNVDSLRSNA 261


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/19 (42%), Positives = 12/19 (63%)
 Frame = +1

Query: 817  RHFKVILGGGRRKFLPNVT 873
            +  KV+LG  + KF+P  T
Sbjct: 1506 KEVKVLLGSDKIKFVPGTT 1524


>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 13/36 (36%), Positives = 20/36 (55%), Gaps = 2/36 (5%)
 Frame = -2

Query: 831 DLEMSP--WXSMTSWYAMSRQPRVRHSAGISTSDSQ 730
           +L+ SP  + S+TS Y   R+   RH    S +DS+
Sbjct: 401 ELKGSPDGFESVTSQYKNIREDDARHIPHASVTDSE 436


>AB204559-1|BAD89804.1|  832|Apis mellifera soluble guanylyl cyclase
           beta-3 protein.
          Length = 832

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = +1

Query: 604 RKLGAVYWTMGH*KRIRRWF 663
           ++ G VY+TMG  + + R F
Sbjct: 136 KRRGFVYYTMGQIREVARHF 155


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 266,641
Number of Sequences: 438
Number of extensions: 7155
Number of successful extensions: 14
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 57
effective length of database: 121,377
effective search space used: 28644972
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)