Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C11
         (885 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0237 + 14068713-14069315,14069654-14069914                       30   2.1  
10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841           30   2.8  
03_05_0558 - 25606718-25606724,25606918-25606995,25608552-256086...    30   2.8  
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916...    29   5.0  
08_01_1058 + 10765837-10766325                                         28   8.7  
05_07_0332 - 29332520-29332818,29333511-29333725,29334380-293344...    28   8.7  

>01_03_0237 + 14068713-14069315,14069654-14069914
          Length = 287

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 15/54 (27%), Positives = 24/54 (44%)
 Frame = +1

Query: 211 RVTSPGTNKWGXGRSSARWAKMMMGFLVKPVTTERSSMMTAAN*PGRPTAPGSW 372
           R   PGT + G     + WA+ +    ++    E  +  T +   GR T+PG W
Sbjct: 166 RRLGPGTQRGGCRAEGSTWARGLASPGLQLKKRELEARRTESEKSGRDTSPGEW 219


>10_05_0028 - 8311041-8311709,8312175-8312478,8314768-8314841
          Length = 348

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 27/88 (30%), Positives = 34/88 (38%), Gaps = 2/88 (2%)
 Frame = +3

Query: 240 GGGKVFGTLGQNDDGLFGKAGYNREIFNDDRGKLTGQAYGTR--VLGPAGDSTNYGGRLD 413
           GGG   G       G +G  GY  +     RG + G + G R  V G  GD  NYGG   
Sbjct: 149 GGGGYSGQGTYGGGGGYGGGGYGGQDAYGGRG-VGGYSEGGRGYVGGGYGDGNNYGGYNT 207

Query: 414 WANKNAEAAIDINRQIGGRSGMTATGSG 497
               N+E          G  G  + G+G
Sbjct: 208 SGGYNSEGGRGGYSVFEGGHGYGSGGTG 235


>03_05_0558 -
           25606718-25606724,25606918-25606995,25608552-25608665,
           25608755-25609266
          Length = 236

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 25/74 (33%), Positives = 33/74 (44%), Gaps = 2/74 (2%)
 Frame = -1

Query: 600 DGTLP-GRRRL-VFCDRIPSRPYRRLRGGCSCQDPTXXXXXXSFQICLRSVYLYQ*QLPH 427
           DG  P G +RL VF D  P R    L G C+C D          Q+C R + +      +
Sbjct: 127 DGERPFGSQRLRVFIDSAPGR----LIGICACNDEKLGHSGYLLQLCGR-LGVLDGNWEY 181

Query: 426 SYWPSLDVHRSLYC 385
           +Y   LDV +  YC
Sbjct: 182 NYVALLDVPKQNYC 195


>01_03_0256 +
           14288885-14288936,14289362-14291335,14291648-14291673,
           14291855-14292025,14292560-14292647,14292711-14292802,
           14292920-14293384,14293860-14294633,14294890-14295087,
           14296940-14297374,14297455-14297688,14298042-14298323
          Length = 1596

 Score = 29.1 bits (62), Expect = 5.0
 Identities = 13/32 (40%), Positives = 19/32 (59%)
 Frame = +2

Query: 503 GS*QEHPPLSRRYGLEGIRSQKTRRRRPGRVP 598
           GS Q +  L RRYG + +    T +++PG VP
Sbjct: 322 GSLQYYQRLGRRYGNKSLEVNATSQKKPGVVP 353


>08_01_1058 + 10765837-10766325
          Length = 162

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 22/58 (37%), Positives = 30/58 (51%), Gaps = 5/58 (8%)
 Frame = +2

Query: 482 SNRLRSVGS*QEHPPLSRRY-GLEGIRSQKTRRRR-PGRVPS*LVIKKIP---SRHHR 640
           SN  RS+ S    PP ++R   L    S + RRRR PG     +V+  +P   S+HHR
Sbjct: 18  SNAARSILSASAAPPPAKRAPSLPAAPSAQCRRRRPPGSAVIIVVLTALPSSSSQHHR 75


>05_07_0332 - 29332520-29332818,29333511-29333725,29334380-29334408,
            29334956-29335045,29335120-29335155,29335222-29336553,
            29337331-29337497,29337519-29337724,29337815-29338036,
            29338332-29338381,29338754-29338870,29339471-29339551,
            29339656-29339694,29340464-29340636,29340769-29340826,
            29340934-29340987,29341066-29341613,29341695-29341755,
            29342180-29342260,29342448-29342630,29342908-29343162,
            29343304-29343423,29343497-29344901,29344988-29345085,
            29345164-29345218,29345307-29345366,29346498-29346697
          Length = 2077

 Score = 28.3 bits (60), Expect = 8.7
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = +3

Query: 387  STNYGGRLDWANKNAEAAIDINRQI 461
            S+ +GG L W N + E+ +D +RQ+
Sbjct: 960  SSLHGGSLPWKNTDFESTVDFDRQL 984


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,716,615
Number of Sequences: 37544
Number of extensions: 424604
Number of successful extensions: 1160
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 1120
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1157
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2503236492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)