Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C08
(874 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein S3a|... 134 2e-32
SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein S3a|S... 133 4e-32
SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|c... 29 1.1
SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces pombe... 27 3.5
SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharo... 26 8.1
SPAC664.08c |||traub transciption factor family protein |Schizos... 26 8.1
>SPAC22H12.04c |rps102|rps1-2, rps3a-2|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 134 bits (324), Expect = 2e-32
Identities = 60/127 (47%), Positives = 91/127 (71%)
Frame = +1
Query: 376 CSATSTXMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 555
C + + +T+DKLR +V+KWQT IEA+ +KTTDGY+ RVF IGFT + + +KT Y
Sbjct: 96 CLTSFNGLSITSDKLRSLVRKWQTTIEADQTIKTTDGYLCRVFVIGFTRRRANQVKKTTY 155
Query: 556 AQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIXKACHGIYPLRDVCIRKV 735
AQ +Q+RAIR+KM ++I ++ +RE+V KLIP+ I ++I +A I+PL++V +RKV
Sbjct: 156 AQSSQIRAIRQKMFQVIQNQTSSCSMRELVQKLIPEVIGREIERATGSIFPLQNVLVRKV 215
Query: 736 KVLXRPR 756
K+L P+
Sbjct: 216 KILKAPK 222
Score = 61.3 bits (142), Expect = 2e-10
Identities = 24/45 (53%), Positives = 34/45 (75%)
Frame = +2
Query: 140 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 274
+VDPF+RK+WYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKEWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
Score = 51.6 bits (118), Expect = 1e-07
Identities = 26/50 (52%), Positives = 36/50 (72%)
Frame = +3
Query: 246 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 395
K A++ LKGR+ EVSLADLQ D E +FRK +L E +QG++ L +F+G
Sbjct: 55 KNANDSLKGRILEVSLADLQ--KDEEHAFRKVKLRVEDIQGKSCLTSFNG 102
>SPAC13G6.02c |rps101|rps1-1, rps3a-1|40S ribosomal protein
S3a|Schizosaccharomyces pombe|chr 1|||Manual
Length = 252
Score = 133 bits (321), Expect = 4e-32
Identities = 60/127 (47%), Positives = 88/127 (69%)
Frame = +1
Query: 376 CSATSTXMDLTTDKLRWMVKKWQTLIEANIDVKTTDGYVLRVFCIGFTNKDSLSQRKTCY 555
C + D+T+DKLR +V+KWQ+ IEAN +KTTDGY+ R+F IGFT++ +KT Y
Sbjct: 96 CLTSFNGFDMTSDKLRSLVRKWQSTIEANQTIKTTDGYLCRIFVIGFTSRRVNQVKKTTY 155
Query: 556 AQHTQVRAIRKKMCEIITRDVTNSELREVVNKLIPDSIAKDIXKACHGIYPLRDVCIRKV 735
AQ +Q+RAI +KM ++I ++E+V KLIP+ I + I KA + IYPL++V +RKV
Sbjct: 156 AQSSQIRAIHQKMFQVIQNQANGCSMKELVQKLIPEVIGRAIEKATNNIYPLQNVFVRKV 215
Query: 736 KVLXRPR 756
K+L P+
Sbjct: 216 KILKAPK 222
Score = 62.9 bits (146), Expect = 6e-11
Identities = 25/45 (55%), Positives = 34/45 (75%)
Frame = +2
Query: 140 IVDPFTRKDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGK 274
+VDPF+RKDWYD+KAP+ F + VG TLVNRT G +N ++G+
Sbjct: 20 VVDPFSRKDWYDIKAPAFFEVKNVGKTLVNRTAGLKNANDSLKGR 64
Score = 52.8 bits (121), Expect = 6e-08
Identities = 27/50 (54%), Positives = 36/50 (72%)
Frame = +3
Query: 246 KIASEGLKGRVFEVSLADLQADTDAERSFRKFRLIAEYVQGRNVLCNFHG 395
K A++ LKGR+ EVSLADLQ D E SFRK +L E +QG++ L +F+G
Sbjct: 55 KNANDSLKGRILEVSLADLQ--KDEEHSFRKVKLRVEDIQGKSCLTSFNG 102
>SPBC106.11c |plg7||phospholipase A2 |Schizosaccharomyces pombe|chr
2|||Manual
Length = 438
Score = 28.7 bits (61), Expect = 1.1
Identities = 22/72 (30%), Positives = 35/72 (48%), Gaps = 1/72 (1%)
Frame = -1
Query: 337 LRKDLSASVSACRSARETSKTLPFNPSEAIFVXLGTVDKRGADLPLAEHRRSLDIVP-IF 161
+ KD S + +A SA E +P +FV GTV +DLP+ R L ++ F
Sbjct: 332 VNKD-SENQNAGESADEKMSVVPLKKYSHVFVYDGTVHANQSDLPILLPRMVLRVLKGKF 390
Query: 160 ASEWVDNLLLNT 125
++ + L +NT
Sbjct: 391 EADPYEALRINT 402
>SPCC1450.08c |wtf16||wtf element Wtf16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 349
Score = 27.1 bits (57), Expect = 3.5
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 161 KDWYDVKAPSMFSKRQVGTTLVNRTQGNENCFGRIEGKSFR 283
++WY ++S + +L+ R +G N GRI G +FR
Sbjct: 290 QEWYSFFPRYVYSTNCMNDSLLTRLEGIGNAIGRI-GNAFR 329
>SPBC12C2.02c |ste20|ste16|sterility protein Ste20|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1309
Score = 25.8 bits (54), Expect = 8.1
Identities = 12/33 (36%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
Frame = +3
Query: 504 LHWFHQ*GLLEPTQDVLRPAHSGQ--SNQKENV 596
LHW+ L+ +Q + P H+GQ S + NV
Sbjct: 1162 LHWYSLMSLMGTSQGICIPRHAGQVLSTPRRNV 1194
>SPAC664.08c |||traub transciption factor family protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 452
Score = 25.8 bits (54), Expect = 8.1
Identities = 14/38 (36%), Positives = 19/38 (50%), Gaps = 1/38 (2%)
Frame = +1
Query: 388 STXMDLTTD-KLRWMVKKWQTLIEANIDVKTTDGYVLR 498
S D T D +RWM K Q + N+D K + G +R
Sbjct: 347 SRMADSTRDGTVRWMATKKQKQKKENVDTKASKGRKIR 384
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,192,828
Number of Sequences: 5004
Number of extensions: 63579
Number of successful extensions: 173
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 163
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 171
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 436477420
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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