Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C06
         (965 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1136 + 24218601-24218734,24218769-24219906                       34   0.19 
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330...    28   9.7  
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943...    28   9.7  

>07_03_1136 + 24218601-24218734,24218769-24219906
          Length = 423

 Score = 33.9 bits (74), Expect = 0.19
 Identities = 23/78 (29%), Positives = 25/78 (32%)
 Frame = -3

Query: 390 GGGXPQKIXXPPXXKGVXXPPXPKGGXIFXGXXKKXXXGGVXXXGFXXPFPXXXGFSXXP 211
           GGG P  +       G   PP P GG       +    GG        P     G    P
Sbjct: 113 GGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGGGGGALARPPGGGRGGALGRP 172

Query: 210 XXGXFXGXGPXXXXGGGG 157
             G   G GP    GGGG
Sbjct: 173 PGGGGGGGGPGRAPGGGG 190


>08_01_0375 -
           3307206-3307316,3307870-3307965,3308061-3308132,
           3308247-3308315,3308427-3308513,3308753-3308858,
           3309118-3309237,3309327-3309406,3309497-3309878,
           3310746-3310814,3311460-3312202
          Length = 644

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 16/43 (37%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
 Frame = +2

Query: 152 FXP-PPPXXXXGPXPXKXPFXGXXEXPXXXGKGXXXPFXXTPP 277
           F P PPP    GP P + P  G    P    +G   PF   PP
Sbjct: 18  FPPQPPPMNPYGPPPPQQPAYGHMPPP----QGAPPPFLAPPP 56


>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
            9435445-9435526,9435610-9435660,9435749-9435829,
            9435965-9436006,9436117-9436215,9438130-9438201,
            9438557-9438680,9438850-9439723,9440274-9440456,
            9440941-9442741,9442825-9443049,9443117-9443814,
            9444519-9444591
          Length = 1541

 Score = 28.3 bits (60), Expect = 9.7
 Identities = 11/23 (47%), Positives = 12/23 (52%)
 Frame = -2

Query: 379  APKNKXPPXXXRGXXPPPPXGGV 311
            AP    PP    G  PPPP GG+
Sbjct: 1108 APPPPPPPGGITGVPPPPPIGGL 1130


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,141,322
Number of Sequences: 37544
Number of extensions: 218598
Number of successful extensions: 422
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 276
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 386
length of database: 14,793,348
effective HSP length: 82
effective length of database: 11,714,740
effective search space used: 2799822860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)