Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C05
(872 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
11_02_0065 - 7938007-7938393,7939292-7939435,7940597-7940665,794... 31 0.91
07_03_1136 + 24218601-24218734,24218769-24219906 31 1.6
04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,943... 31 1.6
02_05_0686 - 30900748-30902167,30903442-30904742 30 2.1
08_01_0375 - 3307206-3307316,3307870-3307965,3308061-3308132,330... 30 2.8
10_01_0100 + 1209424-1209538,1210373-1211073,1211158-1211379,121... 29 4.9
04_04_0053 + 22389227-22389613,22390528-22390981,22391618-223916... 29 4.9
07_03_0890 - 22332768-22333382 29 6.4
09_04_0081 - 14400293-14400397,14400953-14401036,14401144-144012... 28 8.5
09_02_0603 - 11150739-11150746,11150791-11151340 28 8.5
03_02_0455 - 8630543-8630893,8630994-8631068,8631149-8631223,863... 28 8.5
>11_02_0065 -
7938007-7938393,7939292-7939435,7940597-7940665,
7940762-7940809,7941488-7941584,7941688-7941767,
7941841-7941912,7942256-7942350,7943903-7943984,
7945176-7945209,7945255-7945262,7945657-7946058
Length = 505
Score = 31.5 bits (68), Expect = 0.91
Identities = 13/32 (40%), Positives = 14/32 (43%)
Frame = -1
Query: 614 PPPPFXXXKXXXXXXPPPPXXFFFFXXXXPPP 519
PPPP + PPPP FF PPP
Sbjct: 53 PPPPPQVIRVFAAAPPPPPAAFFAAVPPPPPP 84
Score = 30.3 bits (65), Expect = 2.1
Identities = 13/32 (40%), Positives = 13/32 (40%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPP 520
PPPP PPPPP F PPP
Sbjct: 53 PPPPPQVIRVFAAAPPPPPAAFFAAVPPPPPP 84
>07_03_1136 + 24218601-24218734,24218769-24219906
Length = 423
Score = 30.7 bits (66), Expect = 1.6
Identities = 16/47 (34%), Positives = 17/47 (36%)
Frame = +2
Query: 476 PPXXXXXXXXXXPPXGGGPXXKKKKXXXGGGGGXXXXFXXXKXGGGG 616
PP PP GGG + GGGGG GGGG
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGPGRAPGGGGGGG 206
Score = 28.7 bits (61), Expect = 6.4
Identities = 18/63 (28%), Positives = 19/63 (30%)
Frame = +2
Query: 428 GXGGXXXKRXFFXXXPPPXXXXXXXXXXPPXGGGPXXKKKKXXXGGGGGXXXXFXXXKXG 607
G GG PP PP GG + GGGGG G
Sbjct: 93 GGGGAPGPLGGGGARPPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAPRRVLGGGG 152
Query: 608 GGG 616
GGG
Sbjct: 153 GGG 155
Score = 28.7 bits (61), Expect = 6.4
Identities = 14/36 (38%), Positives = 15/36 (41%)
Frame = +2
Query: 515 PXGGGPXXKKKKXXXGGGGGXXXXFXXXKXGGGGXP 622
P GGG + GGGGG GGGG P
Sbjct: 160 PPGGGRGGALGRPPGGGGGGGGPGRAPGGGGGGGGP 195
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = +2
Query: 512 PPXGGGPXXKKKKXXXGGGGGXXXXFXXXKXGGGGXP 622
PP GGG GGGG GGGG P
Sbjct: 108 PPGGGGGGGPPSLPPGAGGGGGARPPAPGGGGGGGAP 144
>04_03_0018 - 9434088-9434141,9434211-9434282,9434968-9435062,
9435445-9435526,9435610-9435660,9435749-9435829,
9435965-9436006,9436117-9436215,9438130-9438201,
9438557-9438680,9438850-9439723,9440274-9440456,
9440941-9442741,9442825-9443049,9443117-9443814,
9444519-9444591
Length = 1541
Score = 30.7 bits (66), Expect = 1.6
Identities = 14/37 (37%), Positives = 14/37 (37%)
Frame = -3
Query: 621 GXPPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPPXGG 511
G PPPP PP PP PPP GG
Sbjct: 1120 GVPPPPPIGGLGGHQAPPAPPLPEGIGGVPPPPPVGG 1156
>02_05_0686 - 30900748-30902167,30903442-30904742
Length = 906
Score = 30.3 bits (65), Expect = 2.1
Identities = 16/37 (43%), Positives = 16/37 (43%)
Frame = -3
Query: 621 GXPPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPPXGG 511
G PPPP K PPPPP PPP GG
Sbjct: 352 GPPPPP---PPKGPSPPPPPPPGGKKGGPPPPPPKGG 385
>08_01_0375 -
3307206-3307316,3307870-3307965,3308061-3308132,
3308247-3308315,3308427-3308513,3308753-3308858,
3309118-3309237,3309327-3309406,3309497-3309878,
3310746-3310814,3311460-3312202
Length = 644
Score = 29.9 bits (64), Expect = 2.8
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +3
Query: 729 PPPXXFFFFXXXXPXPXXKKXXXXPPPPXXGXXXXXXXXXTXPPPP 866
PPP ++ P P PPPP PPPP
Sbjct: 83 PPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPPP 128
Score = 29.1 bits (62), Expect = 4.9
Identities = 13/46 (28%), Positives = 15/46 (32%)
Frame = +3
Query: 729 PPPXXFFFFXXXXPXPXXKKXXXXPPPPXXGXXXXXXXXXTXPPPP 866
PPP ++ P P PPPP PPPP
Sbjct: 82 PPPPPQMYYQPPPPPPPYGVNSSQPPPPPPPPPSPPPSAPPPPPPP 127
>10_01_0100 +
1209424-1209538,1210373-1211073,1211158-1211379,
1211452-1211878,1212091-1213219,1213623-1213746,
1214207-1214278,1215480-1215578,1215617-1215640,
1215704-1215745,1215815-1215895,1215983-1216114,
1216115-1216196,1216271-1216365,1218499-1218570,
1218676-1218792,1219379-1219447,1219521-1219587,
1219886-1220025
Length = 1269
Score = 29.1 bits (62), Expect = 4.9
Identities = 12/32 (37%), Positives = 12/32 (37%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPP 520
PPPP PPPPP PPP
Sbjct: 607 PPPPILPNRSVPPPPPPPPPLPNHSVLPPPPP 638
Score = 29.1 bits (62), Expect = 4.9
Identities = 11/25 (44%), Positives = 12/25 (48%)
Frame = -3
Query: 633 KKXXGXPPPPXFXXXKXXXXPPPPP 559
K+ PPPP K PPPPP
Sbjct: 744 KRNPPAPPPPPLMTGKKAPAPPPPP 768
Score = 28.7 bits (61), Expect = 6.4
Identities = 12/32 (37%), Positives = 13/32 (40%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPP 520
PPPP + PPPPP PPP
Sbjct: 606 PPPPPILPNRSVPPPPPPPPPLPNHSVLPPPP 637
Score = 28.3 bits (60), Expect = 8.5
Identities = 10/19 (52%), Positives = 10/19 (52%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPP 559
PPPP K PPPPP
Sbjct: 751 PPPPLMTGKKAPAPPPPPP 769
>04_04_0053 +
22389227-22389613,22390528-22390981,22391618-22391673,
22391757-22391887,22391976-22392072,22393329-22393484
Length = 426
Score = 29.1 bits (62), Expect = 4.9
Identities = 14/32 (43%), Positives = 14/32 (43%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPP 520
PPPP PPPPP F GPPP
Sbjct: 52 PPPPPMVAA-----PPPPPPQYAKHFAAGPPP 78
>07_03_0890 - 22332768-22333382
Length = 204
Score = 28.7 bits (61), Expect = 6.4
Identities = 13/34 (38%), Positives = 13/34 (38%)
Frame = -3
Query: 621 GXPPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPP 520
G PPPP PPPPP PPP
Sbjct: 73 GSPPPPPAEATPPPPPPPPPPERAVPEAADTPPP 106
>09_04_0081 -
14400293-14400397,14400953-14401036,14401144-14401214,
14401293-14401380,14401487-14401678,14401772-14402704
Length = 490
Score = 28.3 bits (60), Expect = 8.5
Identities = 14/35 (40%), Positives = 14/35 (40%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPPXGG 511
PPPP PPPPP GPPP G
Sbjct: 140 PPPPHVPKAAPPPPPPPPPHA-----PPGPPPTKG 169
>09_02_0603 - 11150739-11150746,11150791-11151340
Length = 185
Score = 28.3 bits (60), Expect = 8.5
Identities = 16/38 (42%), Positives = 16/38 (42%), Gaps = 4/38 (10%)
Frame = -3
Query: 621 GXPPPPX----FXXXKXXXXPPPPPXXXFFFFXXGPPP 520
G PPPP F PPPPP FF PPP
Sbjct: 42 GFPPPPPPGSTFVPLPQSGVPPPPPLGSFFV----PPP 75
>03_02_0455 -
8630543-8630893,8630994-8631068,8631149-8631223,
8631332-8631397,8631891-8631967,8632659-8633070
Length = 351
Score = 28.3 bits (60), Expect = 8.5
Identities = 13/35 (37%), Positives = 13/35 (37%)
Frame = -3
Query: 615 PPPPXFXXXKXXXXPPPPPXXXFFFFXXGPPPXGG 511
PPPP PPPPP PPP G
Sbjct: 267 PPPPQVPPPPPQAPPPPPPNAPMGMPPRIPPPPVG 301
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 21,018,517
Number of Sequences: 37544
Number of extensions: 580218
Number of successful extensions: 2105
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 631
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1560
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2456227356
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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