Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_C03
(881 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A... 82 9e-17
SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B sub... 81 2e-16
SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2... 77 3e-15
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 29 1.2
SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 27 2.7
SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr ... 27 2.7
SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr 2|||... 27 4.7
SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein Mam... 26 8.2
>SPBP8B7.06 |rpp201|rpp2, rpp2-1|60S acidic ribosomal protein P2A
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 82.2 bits (194), Expect = 9e-17
Identities = 35/69 (50%), Positives = 53/69 (76%)
Frame = +3
Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
M+Y GGK +P+A+D+E LS+VGIEA++E+++ +I ELNGKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKDSPSASDIESVLSTVGIEAESERIETLINELNGKDIDELIAAGNE 60
Query: 309 KLSSMPVGG 335
KL+++P GG
Sbjct: 61 KLATVPTGG 69
>SPBC23G7.15c |rpp202|rpp2-2|60S acidic ribosomal protein P2B
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 110
Score = 81.0 bits (191), Expect = 2e-16
Identities = 36/69 (52%), Positives = 53/69 (76%)
Frame = +3
Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
M+Y GGK +P+A+D+E LS+VGIEA+AE+++ +I+ELNGK++E+LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKQSPSASDIESVLSTVGIEAEAERVESLISELNGKNIEELIAAGNE 60
Query: 309 KLSSMPVGG 335
KLS++P G
Sbjct: 61 KLSTVPSAG 69
>SPAC1071.08 |rpp203|rpp2-3, rla6|60S acidic ribosomal protein P2C
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 110
Score = 77.4 bits (182), Expect = 3e-15
Identities = 33/69 (47%), Positives = 53/69 (76%)
Frame = +3
Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
M+Y GGK +P+A+D+E LS+VGIE+++E+++ +I EL+GKD+++LIAAG E
Sbjct: 1 MKYLAAYLLLTVGGKNSPSASDIESVLSTVGIESESERVEALIKELDGKDIDELIAAGNE 60
Query: 309 KLSSMPVGG 335
KL+++P GG
Sbjct: 61 KLATVPSGG 69
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 28.7 bits (61), Expect = 1.2
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Frame = -2
Query: 334 PPTGIDDSFSRPAA------ISCSTSLPLSSVITFLSFSASASIPTELRXFSTSAAAGVX 173
PPTG S S P + STS+P+ T + + S +PT STS
Sbjct: 122 PPTGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTT----STSCTTSTS 177
Query: 172 LPPSTASKXAAT 137
+PP+ S +T
Sbjct: 178 IPPTGGSSSLST 189
>SPAC11G7.01 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 536
Score = 27.5 bits (58), Expect = 2.7
Identities = 18/45 (40%), Positives = 28/45 (62%), Gaps = 2/45 (4%)
Frame = -2
Query: 265 SSVITFLSFSASASIP--TELRXFSTSAAAGVXLPPSTASKXAAT 137
SSV T LS SAS+SIP + STS ++ +P S++S +++
Sbjct: 8 SSVDTSLSSSASSSIPASSSSAAASTSLSSSSVIPSSSSSMLSSS 52
>SPCC285.13c |||nucleoporin Nup60 |Schizosaccharomyces pombe|chr
3|||Manual
Length = 736
Score = 27.5 bits (58), Expect = 2.7
Identities = 16/53 (30%), Positives = 29/53 (54%)
Frame = -2
Query: 313 SFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRXFSTSAAAGVXLPPSTA 155
SF P+A + S P+SS+ +F + SA+++ P+ + S A P +T+
Sbjct: 451 SFKAPSATTDKPSPPVSSIFSFNAPSAASTKPSPAVSSTFSFNAPTTTPSATS 503
>SPBC215.13 |||sequence orphan|Schizosaccharomyces pombe|chr
2|||Manual
Length = 534
Score = 26.6 bits (56), Expect = 4.7
Identities = 20/68 (29%), Positives = 32/68 (47%), Gaps = 3/68 (4%)
Frame = -2
Query: 331 PTGIDDSFSRPAAISCSTSLPLSS---VITFLSFSASASIPTELRXFSTSAAAGVXLPPS 161
PT S+ +++ S+S P SS +T S S S+ T STS++ S
Sbjct: 202 PTSTSSSYLSSSSVVSSSSSPSSSSSSTLTSSSLSTSSIPSTSSSSSSTSSSLSSSSSSS 261
Query: 160 TASKXAAT 137
TAS +++
Sbjct: 262 TASSSSSS 269
>SPAP11E10.02c |mam3|SPAPB1A10.01c|cell agglutination protein
Mam3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1082
Score = 25.8 bits (54), Expect = 8.2
Identities = 15/66 (22%), Positives = 30/66 (45%)
Frame = -2
Query: 334 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRXFSTSAAAGVXLPPSTA 155
P ++ + + S ++ SSV S +AS+++P + S + + PST
Sbjct: 209 PAVSSSETLTSVSITSTESAYTSSSVDIAASTTASSTLPVSTSEATVSFSTDIPATPSTL 268
Query: 154 SKXAAT 137
S A++
Sbjct: 269 SSPASS 274
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,665,018
Number of Sequences: 5004
Number of extensions: 18952
Number of successful extensions: 83
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 83
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 442483990
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -