Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C03
         (881 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     71   1e-12
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    62   6e-10
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           61   1e-09
07_01_1001 - 8460467-8460799                                           47   2e-05
07_03_0321 + 16757414-16757743                                         45   9e-05
01_06_0098 - 26416768-26416998                                         30   2.8  
06_03_0854 + 25400855-25403741,25406174-25407708                       29   3.7  
12_01_0090 + 717524-719080                                             29   6.5  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 70.9 bits (166), Expect = 1e-12
 Identities = 30/58 (51%), Positives = 46/58 (79%)
 Frame = +3

Query: 165 GGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGREKLSSMPVGGG 338
           GG  +P+A D++  L SVG+EA+ E+L+ +++EL GKD+ ++IAAGREK +S+P GGG
Sbjct: 13  GGNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASVPSGGG 70


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 62.1 bits (144), Expect = 6e-10
 Identities = 27/71 (38%), Positives = 44/71 (61%)
 Frame = +3

Query: 126 KMRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGR 305
           +M++          G   P+A D+   L SVG E D  K++ ++++L GKD+ ++IA+GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 306 EKLSSMPVGGG 338
           EK +S+P GGG
Sbjct: 253 EKFASVPCGGG 263


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 61.3 bits (142), Expect = 1e-09
 Identities = 27/70 (38%), Positives = 43/70 (61%)
 Frame = +3

Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
           M++          G  +P A D+   L SVG E D  K++ ++++++GKD+ +LIA GRE
Sbjct: 1   MKFISAYLMAYLAGNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGRE 60

Query: 309 KLSSMPVGGG 338
           K +S+P GGG
Sbjct: 61  KFASVPSGGG 70


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 46.8 bits (106), Expect = 2e-05
 Identities = 23/68 (33%), Positives = 36/68 (52%)
 Frame = +3

Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
           MR+         GG  +P   DV   L +VG + D +KL  +  ++ GKD+ +++AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60

Query: 309 KLSSMPVG 332
            L+   VG
Sbjct: 61  MLAFGGVG 68


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 44.8 bits (101), Expect = 9e-05
 Identities = 21/63 (33%), Positives = 34/63 (53%)
 Frame = +3

Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
           MR+         GG  +P   DV   L +VG + D +KL  +  ++ GKD+ +++AAG E
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60

Query: 309 KLS 317
            L+
Sbjct: 61  MLA 63


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 29.9 bits (64), Expect = 2.8
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 180 PAAADVEKXLSSVGIEADAEKLKKVITELNGKD 278
           P    V K + +V IEAD+ + K ++  L GKD
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>06_03_0854 + 25400855-25403741,25406174-25407708
          Length = 1473

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 23/81 (28%), Positives = 35/81 (43%)
 Frame = -2

Query: 337  PPPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRXFSTSAAAGVXLPPST 158
            PPP  I  +    A +S     P+S+V + L+ SASA+       F+ +  A   +PP  
Sbjct: 1120 PPPAPIPAATPAKALVSAPAPAPISTVSSTLAASASAA-----AAFAPAPVAAEAIPPPP 1174

Query: 157  ASKXAAT*RIF*GXIDTKRXM 95
                AA   +     D KR +
Sbjct: 1175 PPLPAAATAVAAPAPDRKRKL 1195


>12_01_0090 + 717524-719080
          Length = 518

 Score = 28.7 bits (61), Expect = 6.5
 Identities = 14/45 (31%), Positives = 23/45 (51%)
 Frame = -2

Query: 334 PPTGIDDSFSRPAAISCSTSLPLSSVITFLSFSASASIPTELRXF 200
           PP  +  S   P  ++ S+S   SS +   + ++S S+PT L  F
Sbjct: 60  PPAVLSPSLVCPVIVAFSSSQAPSSALLLFNHASSCSLPTPLPTF 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,452,222
Number of Sequences: 37544
Number of extensions: 148708
Number of successful extensions: 377
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 371
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 377
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2491484208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)