Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C03
         (881 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical pr...    58   1e-08
AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical ...    57   2e-08
Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical pr...    29   3.3  
Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical p...    29   3.3  

>U97194-7|AAB52450.2|  107|Caenorhabditis elegans Hypothetical
           protein C37A2.7 protein.
          Length = 107

 Score = 57.6 bits (133), Expect = 1e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%)
 Frame = +3

Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
           M+Y         GG  +P+A DV K L + G++ D E    V+  L GK + ++IA G+ 
Sbjct: 1   MKYLGAYLLATLGGNASPSAQDVLKVLEAGGLDCDMENANSVVDALKGKTISEVIAQGKV 60

Query: 309 KLSSMPVGG 335
           KLSS+P GG
Sbjct: 61  KLSSVPSGG 69


>AL132865-1|CAB60595.1|  110|Caenorhabditis elegans Hypothetical
           protein Y62E10A.1 protein.
          Length = 110

 Score = 56.8 bits (131), Expect = 2e-08
 Identities = 38/112 (33%), Positives = 46/112 (41%)
 Frame = +3

Query: 129 MRYXXXXXXXXXGGKXTPAAADVEKXLSSVGIEADAEKLKKVITELNGKDVEQLIAAGRE 308
           MRY         GG   P   D++  LS+VG++ADAE  K V++ L GK VE+LIA G  
Sbjct: 1   MRYVSAYLLAVLGGNANPKVDDLKNILSAVGVDADAETAKLVVSRLAGKTVEELIAEGSA 60

Query: 309 KLSSMPVGGGXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXMGFGLFD 464
            L S  V GG                                   MGFGLFD
Sbjct: 61  GLVS--VSGGAAPAAAAAPAAGGAAPAADSKPAKKEEPKEESDDDMGFGLFD 110


>Z70752-5|CAA94758.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 177 TPAAADVEKXLSSVGIEADAEKLKKVITEL-NGKDVEQLI 293
           TPA+A   +   + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 445 TPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


>Z70750-16|CAA94750.1|  901|Caenorhabditis elegans Hypothetical
           protein F25B3.1 protein.
          Length = 901

 Score = 29.5 bits (63), Expect = 3.3
 Identities = 15/40 (37%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +3

Query: 177 TPAAADVEKXLSSVGIEADAEKLKKVITEL-NGKDVEQLI 293
           TPA+A   +   + GI    EK+  +ITE+ N KD+E+ +
Sbjct: 445 TPASASDHRISRTFGINESEEKVVAMITEIRNQKDLEEAV 484


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,705,174
Number of Sequences: 27780
Number of extensions: 118577
Number of successful extensions: 310
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 306
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 310
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2223883816
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)