Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C02
         (870 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein...    33   0.27 
U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein...    33   0.27 
U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.        30   2.5  
U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein ...    30   2.5  

>U41994-2|AAO38634.1|  154|Caenorhabditis elegans Rnase h protein
           1.0, isoform b protein.
          Length = 154

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +2

Query: 194 KXKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDXYTNKKAVEEFLKMYXTGFMPKNLE 373
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 374 FSVFYDKMRDEAIALFHLFYYAKD 445
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U41994-1|AAO91711.1|  155|Caenorhabditis elegans Rnase h protein
           1.0, isoform a protein.
          Length = 155

 Score = 33.1 bits (72), Expect = 0.27
 Identities = 25/84 (29%), Positives = 42/84 (50%)
 Frame = +2

Query: 194 KXKKILSFFQDVSQLNTDDEYYKIGKDYDIEMNMDXYTNKKAVEEFLKMYXTGFMPKNLE 373
           K KK+ S F +    +T D YY + + + + +    +TN   V+E +K Y     P + +
Sbjct: 51  KPKKVESTFPE----STHDTYYAVARGHSVGV----FTNYNEVKEHIKNYP---QPLHKK 99

Query: 374 FSVFYDKMRDEAIALFHLFYYAKD 445
           +S       +EAIA FH +Y  K+
Sbjct: 100 WSTL-----EEAIAYFHKYYEGKE 118


>U58086-1|AAC47123.1|  803|Caenorhabditis elegans CUL-4 protein.
          Length = 803

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 362 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 496
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 455 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 499


>U29536-1|AAA68791.3|  840|Caenorhabditis elegans Cullin protein 4
           protein.
          Length = 840

 Score = 29.9 bits (64), Expect = 2.5
 Identities = 16/45 (35%), Positives = 21/45 (46%)
 Frame = +2

Query: 362 KNLEFSVFYDKMRDEAIALFHLFYYAKDFETFYKTACFARVHLNQ 496
           KN+      D+M DEAI LF        FE +YK     R+ L +
Sbjct: 492 KNVSDDTTLDQMVDEAIVLFRYLRGKDVFEAYYKRGLAKRLFLER 536


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,631,240
Number of Sequences: 27780
Number of extensions: 233041
Number of successful extensions: 543
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 523
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 543
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2181923744
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)