Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_C01
         (944 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    30   0.41 
SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces po...    30   0.41 
SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces po...    28   1.7  
SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces pomb...    28   1.7  
SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    28   1.7  
SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces pom...    27   5.1  
SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual      26   6.7  
SPBC947.07 |||ribosome biogenesis protein Rrp14-C|Schizosaccharo...    26   8.9  
SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomy...    26   8.9  
SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase |Schizosacchar...    26   8.9  

>SPAC17A2.10c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 230

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 18/42 (42%), Positives = 18/42 (42%), Gaps = 6/42 (14%)
 Frame = -2

Query: 292 LFFFFFXXFFXFFFFXFXXXFFXSFFF------FXFFXFXFF 185
           L FFFF  FF  F F F   FF S  F      F    F FF
Sbjct: 117 LLFFFFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFF 158



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 15/40 (37%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
 Frame = -2

Query: 301 FXXLFFFFFXXFFXFFFF--XFXXXFFXSFFFFXFFXFXF 188
           F  LFF  F   F F FF       +F SF    F  F F
Sbjct: 121 FFLLFFLSFSFSFSFLFFLSQIFIVYFSSFPILHFLFFFF 160



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 13/39 (33%), Positives = 14/39 (35%)
 Frame = -2

Query: 301 FXXLFFFFFXXFFXFFFFXFXXXFFXSFFFFXFFXFXFF 185
           F   F FF    F  +F  F    F  FFF     F  F
Sbjct: 131 FSFSFLFFLSQIFIVYFSSFPILHFLFFFFLCVCVFLSF 169


>SPAC29A4.04c |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 474

 Score = 30.3 bits (65), Expect = 0.41
 Identities = 16/29 (55%), Positives = 20/29 (68%), Gaps = 1/29 (3%)
 Frame = +2

Query: 209 KKKKRXEKXXXKXKK-KKXKKXXKKKKKK 292
           K++KR +K   K KK KK KK  K+KKKK
Sbjct: 444 KEEKRRKKEAKKEKKEKKEKKEKKEKKKK 472



 Score = 28.3 bits (60), Expect = 1.7
 Identities = 12/32 (37%), Positives = 20/32 (62%)
 Frame = +2

Query: 194 KXKKXKKKKRXEKXXXKXKKKKXKKXXKKKKK 289
           K ++ ++KK  +K   + K+KK KK  KKK +
Sbjct: 443 KKEEKRRKKEAKKEKKEKKEKKEKKEKKKKSE 474


>SPAC890.05 |||ribosome biogenesis protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 284

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = +2

Query: 185 KKXKXKKXKKKKRXEKXXXKXKKKKXKKXXKKKKKKXXK 301
           +K   KK K+ K+ +K     K+K      ++KKKK  K
Sbjct: 193 EKITKKKKKEHKKKDKESSSKKRKSGSSDKEEKKKKKIK 231



 Score = 27.1 bits (57), Expect = 3.8
 Identities = 16/42 (38%), Positives = 21/42 (50%), Gaps = 3/42 (7%)
 Frame = +2

Query: 185 KKXKXKKXKKKKRXEKXXXKXK---KKKXKKXXKKKKKKXXK 301
           K+ K KK   KK+ +K          KK +K  KKKKK+  K
Sbjct: 164 KREKRKKHSSKKKSKKKTSTGSALDPKKLEKITKKKKKEHKK 205


>SPBC646.10c |||U3 snoRNP protein Nop56 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 497

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 14/35 (40%), Positives = 19/35 (54%)
 Frame = +2

Query: 185 KKXKXKKXKKKKRXEKXXXKXKKKKXKKXXKKKKK 289
           K+ K KK KKK++ +K        +  K  KKKKK
Sbjct: 461 KEKKDKKEKKKEKSKKKRSADDASEEVKKSKKKKK 495


>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 28.3 bits (60), Expect = 1.7
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +2

Query: 185 KKXKXKKXKKKKRXEKXXXKXKKKKXKKXXKKK 283
           +K K K+ K +KR  K     KK+K K+  +KK
Sbjct: 489 RKKKTKEDKAEKRKSKIPKYEKKRKLKQSGRKK 521


>SPBC713.07c |||vacuolar polyphosphatase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 577

 Score = 26.6 bits (56), Expect = 5.1
 Identities = 12/22 (54%), Positives = 13/22 (59%)
 Frame = +2

Query: 242 KXKKKKXKKXXKKKKKKXXKXG 307
           K KKKK  K  KK K+K  K G
Sbjct: 438 KKKKKKNNKKKKKNKRKNIKPG 459



 Score = 26.2 bits (55), Expect = 6.7
 Identities = 12/18 (66%), Positives = 12/18 (66%)
 Frame = +2

Query: 248 KKKKXKKXXKKKKKKXXK 301
           KKKK KK  KKKKK   K
Sbjct: 437 KKKKKKKNNKKKKKNKRK 454



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +2

Query: 248 KKKKXKKXXKKKKKKXXKXGV 310
           KKKK KK   KKKKK  +  +
Sbjct: 436 KKKKKKKKNNKKKKKNKRKNI 456


>SPAPB15E9.02c |||dubious|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 188

 Score = 26.2 bits (55), Expect = 6.7
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = -2

Query: 283 FFFXXFFXFFFFXFXXXFFXSFFFFXF 203
           FF+  FF FFFF     F  + F   +
Sbjct: 74  FFYWFFFFFFFFSHCRRFHIAIFIHPY 100



 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/33 (39%), Positives = 14/33 (42%)
 Frame = -2

Query: 286 FFFFXXFFXFFFFXFXXXFFXSFFFFXFFXFXF 188
           FFF   F  F    F   F  SFFF   + F F
Sbjct: 5   FFFASLFSSFESLFFRLFFVCSFFFPLLYSFIF 37


>SPBC947.07 |||ribosome biogenesis protein
           Rrp14-C|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 233

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +2

Query: 185 KKXKXKKXKKKKRXEKXXXKXKKKKXKKXXKKK 283
           ++ + ++  KK+R  K   K K  K KK  KKK
Sbjct: 201 RQQRREENLKKRRESKKSKKGKAPKKKKPSKKK 233


>SPBC25B2.05 |mis3||rRNA processing protein Mis3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 327

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 11/30 (36%), Positives = 19/30 (63%)
 Frame = +2

Query: 194 KXKKXKKKKRXEKXXXKXKKKKXKKXXKKK 283
           K ++ ++KKR EK   + +KKK K+  + K
Sbjct: 283 KKEEKERKKRAEKKEQQKEKKKEKEKERMK 312


>SPBC1198.07c |||mannan endo-1,6-alpha-mannosidase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 8.9
 Identities = 13/35 (37%), Positives = 15/35 (42%)
 Frame = -2

Query: 292 LFFFFFXXFFXFFFFXFXXXFFXSFFFFXFFXFXF 188
           L FF+    + FF       FF  FFF   F F F
Sbjct: 51  LLFFYPKRNWWFFIKMRYLSFFFEFFFLFSFAFAF 85


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 910,931
Number of Sequences: 5004
Number of extensions: 8639
Number of successful extensions: 95
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 34
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 73
effective length of database: 1,997,186
effective search space used: 481321826
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)