Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_B23
(886 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr 2||... 308 7e-85
SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces pomb... 174 2e-44
SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex s... 173 3e-44
SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyce... 143 3e-35
SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces pombe... 89 6e-19
SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomy... 85 1e-17
SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit Arp42|Sc... 79 8e-16
SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit Arp9|Schizosa... 65 1e-11
SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces po... 44 2e-05
SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces pomb... 36 0.010
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 32 0.094
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce... 32 0.12
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 31 0.29
SPCC18.03 |||shuttle craft like transcriptional regulator|Schizo... 29 0.67
SPAPB1A10.09 |ase1||microtubule-associated protein Ase1 |Schizos... 29 0.67
SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyc... 27 2.7
SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineur... 27 3.6
SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces... 27 3.6
SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces p... 26 6.2
SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2 |Schizosa... 26 6.2
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 26 8.2
SPBC4C3.12 |sep1||fork head transcription factor Sep1|Schizosacc... 26 8.2
>SPBC32H8.12c |act1|cps8|actin |Schizosaccharomyces pombe|chr
2|||Manual
Length = 375
Score = 308 bits (756), Expect = 7e-85
Identities = 142/155 (91%), Positives = 147/155 (94%)
Frame = +2
Query: 278 PAIRXVMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVA 457
P +MVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIV NWDDMEKIWHHTFYNELRVA
Sbjct: 38 PRHHGIMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVNNWDDMEKIWHHTFYNELRVA 97
Query: 458 PEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGD 637
PEEHP LLTEAPLNPK+NREKMTQI+FETFN PA YVAIQAVLSLYASGRTTGIVLDSGD
Sbjct: 98 PEEHPCLLTEAPLNPKSNREKMTQIIFETFNAPAFYVAIQAVLSLYASGRTTGIVLDSGD 157
Query: 638 GVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 742
GV+HTVPIYEGYALPHAI+RLDLAGRDLTDYLMKI
Sbjct: 158 GVTHTVPIYEGYALPHAIMRLDLAGRDLTDYLMKI 192
Score = 62.5 bits (145), Expect = 8e-11
Identities = 28/35 (80%), Positives = 31/35 (88%)
Frame = +1
Query: 742 LTERGYSFTTTAEREIVRDIKEXLCYVXLDFXQEM 846
L ERGY+F+TTAEREIVRDIKE LCYV LDF QE+
Sbjct: 193 LMERGYTFSTTAEREIVRDIKEKLCYVALDFEQEL 227
Score = 61.7 bits (143), Expect = 1e-10
Identities = 26/35 (74%), Positives = 31/35 (88%)
Frame = +3
Query: 171 KKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 275
+++ LV+DNGSGMCKAGFAGDDAPRAVFPS G+
Sbjct: 3 EEIAALVIDNGSGMCKAGFAGDDAPRAVFPSIVGR 37
>SPBC1347.12 |||actin-like protein Arp1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 379
Score = 174 bits (423), Expect = 2e-44
Identities = 78/148 (52%), Positives = 110/148 (74%), Gaps = 1/148 (0%)
Frame = +2
Query: 293 VMVGMGQKDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNE-LRVAPEEH 469
VM QKD +VG EAQ+ RG+L ++ PIE GI+ NW DME+IW + + ++ L PEEH
Sbjct: 47 VMPSSIQKDMFVGSEAQNLRGLLKIQRPIERGIIQNWSDMEEIWSYIYSDQQLNTLPEEH 106
Query: 470 PVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSH 649
P+LLTE PL N+EK+ + +ET N PA+ ++Q VL+LYAS RTTGIVL+ GDG++H
Sbjct: 107 PLLLTEPPLANIRNKEKIAEYFYETLNVPALSFSLQPVLALYASARTTGIVLECGDGLTH 166
Query: 650 TVPIYEGYALPHAILRLDLAGRDLTDYL 733
+VPIY+G+++P AI + ++ GRD+TDYL
Sbjct: 167 SVPIYDGFSIPSAIQQEEIGGRDVTDYL 194
Score = 44.8 bits (101), Expect = 2e-05
Identities = 17/30 (56%), Positives = 23/30 (76%)
Frame = +3
Query: 186 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 275
+ +DNGSG KAGFAGDD P+ +FP+ G+
Sbjct: 12 ICIDNGSGFIKAGFAGDDIPKCLFPTCVGR 41
Score = 40.3 bits (90), Expect = 4e-04
Identities = 17/35 (48%), Positives = 24/35 (68%)
Frame = +1
Query: 742 LTERGYSFTTTAEREIVRDIKEXLCYVXLDFXQEM 846
L + G+ ++AE+EIVR+IKE CYV DF E+
Sbjct: 198 LRKSGHELVSSAEKEIVREIKEKCCYVASDFRSEI 232
>SPAC11H11.06 |arp2|SPAC22F8.01|ARP2/3 actin-organizing complex
subunit Arp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 390
Score = 173 bits (421), Expect = 3e-44
Identities = 75/143 (52%), Positives = 108/143 (75%)
Frame = +2
Query: 314 KDSYVGDEAQSKRGILTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 493
KD VGDEA++ R +L +KYP+E+GI+ ++++M ++W +TF+ +L++ P +LLTE P
Sbjct: 50 KDVMVGDEAEAVRSLLQVKYPMENGIIRDFEEMNQLWDYTFFEKLKIDPRGRKILLTEPP 109
Query: 494 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGY 673
+NP ANREKM + MFE + +YVAIQAVLSLYA G ++G+V+DSGDGV+H VP+YE
Sbjct: 110 MNPVANREKMCETMFERYGFGGVYVAIQAVLSLYAQGLSSGVVVDSGDGVTHIVPVYESV 169
Query: 674 ALPHAILRLDLAGRDLTDYLMKI 742
L H + RLD+AGRD T YL+ +
Sbjct: 170 VLNHLVGRLDVAGRDATRYLISL 192
Score = 38.3 bits (85), Expect = 0.001
Identities = 16/30 (53%), Positives = 21/30 (70%)
Frame = +1
Query: 742 LTERGYSFTTTAEREIVRDIKEXLCYVXLD 831
L +GY+F TA+ E VR++KE LCYV D
Sbjct: 193 LLRKGYAFNRTADFETVREMKEKLCYVSYD 222
Score = 36.7 bits (81), Expect = 0.004
Identities = 15/30 (50%), Positives = 21/30 (70%)
Frame = +3
Query: 186 LVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 275
+V+DNG+G K G+A D+ PR FPS G+
Sbjct: 6 IVLDNGTGFVKVGYAKDNFPRFQFPSIVGR 35
>SPAC630.03 |arp3|act2|actin-like protein Arp3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 427
Score = 143 bits (346), Expect = 3e-35
Identities = 68/151 (45%), Positives = 96/151 (63%), Gaps = 9/151 (5%)
Frame = +2
Query: 317 DSYVGDEAQSKRGI-LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAP 493
D ++G++A K +L YPI HG + NWD ME+ W + + LR PE+H LLTE P
Sbjct: 73 DFFIGNDALKKASAGYSLDYPIRHGQIENWDHMERFWQQSLFKYLRCEPEDHYFLLTEPP 132
Query: 494 LNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRT--------TGIVLDSGDGVSH 649
LNP NRE +IMFE+FN +Y+A+QAVL+L AS + TG V+DSGDGV+H
Sbjct: 133 LNPPENRENTAEIMFESFNCAGLYIAVQAVLALAASWTSSKVTDRSLTGTVVDSGDGVTH 192
Query: 650 TVPIYEGYALPHAILRLDLAGRDLTDYLMKI 742
+P+ EGY + +I + LAGRD+T ++ +
Sbjct: 193 IIPVAEGYVIGSSIKTMPLAGRDVTYFVQSL 223
Score = 38.3 bits (85), Expect = 0.001
Identities = 14/26 (53%), Positives = 21/26 (80%)
Frame = +3
Query: 186 LVVDNGSGMCKAGFAGDDAPRAVFPS 263
+++DNG+G K G+AG+DAP VFP+
Sbjct: 8 IIMDNGTGYSKLGYAGNDAPSYVFPT 33
>SPBC365.10 |||actin-like protein Arp5 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 721
Score = 89.4 bits (212), Expect = 6e-19
Identities = 44/149 (29%), Positives = 83/149 (55%), Gaps = 3/149 (2%)
Frame = +2
Query: 305 MGQKDSYVGDEAQSKRGILTL-KYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLL 481
+ + + VG++ + G ++ + P E +++NWD ME++ +TF +L + EHP+ +
Sbjct: 62 LSRTSTLVGNDTLIEVGSRSIARSPFERNVISNWDLMEQVLDYTFL-KLGIDRMEHPICM 120
Query: 482 TEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGR--TTGIVLDSGDGVSHTV 655
TE NP R MT+++FE +N P++ I + S Y + + ++GIVL+ G+ SH +
Sbjct: 121 TEPLANPTYVRSTMTELLFELYNAPSVAYGIDGLFSFYHNTKPSSSGIVLNLGNAASHVI 180
Query: 656 PIYEGYALPHAILRLDLAGRDLTDYLMKI 742
P+ G + R+ G + YL+K+
Sbjct: 181 PVLNGERILSEAKRISWGGSQSSSYLLKL 209
Score = 30.7 bits (66), Expect = 0.29
Identities = 12/24 (50%), Positives = 17/24 (70%)
Frame = +3
Query: 186 LVVDNGSGMCKAGFAGDDAPRAVF 257
LV+DNGS +AG+ G+ P+ VF
Sbjct: 27 LVIDNGSWQLRAGWGGEKDPKLVF 50
>SPBP23A10.08 |alp5|arp4|actin-like protein Arp4|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 433
Score = 85.4 bits (202), Expect = 1e-17
Identities = 43/125 (34%), Positives = 64/125 (51%)
Frame = +2
Query: 359 LTLKYPIEHGIVTNWDDMEKIWHHTFYNELRVAPEEHPVLLTEAPLNPKANREKMTQIMF 538
+ +K I +G V NWD +W + +L+ P EHP+L+TE NP NR K + MF
Sbjct: 63 MEIKNAIRNGWVENWDVTVDLWRYGLEQQLKTNPLEHPILITEPFDNPPENRVKTLETMF 122
Query: 539 ETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRD 718
E+ PA Y+A Q + +ASG+ T ++D G S IY+G+ L +G
Sbjct: 123 ESLRCPATYLAKQETCAAFASGKGTACLVDIGAERSSVSAIYDGFVLQKGYQVQHFSGNA 182
Query: 719 LTDYL 733
+ D L
Sbjct: 183 INDIL 187
Score = 33.9 bits (74), Expect = 0.031
Identities = 14/42 (33%), Positives = 25/42 (59%)
Frame = +3
Query: 150 TNSSCAXKKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSXRGK 275
T++ ++ +V+D GS + GF+G+D P+ V PS G+
Sbjct: 2 TSAFYGGDEVSAIVIDPGSKWTRIGFSGEDIPKCVLPSYCGE 43
>SPAC23D3.09 |arp42|arp4|SWI/SNF and RSC complex subunit
Arp42|Schizosaccharomyces pombe|chr 1|||Manual
Length = 430
Score = 79.0 bits (186), Expect = 8e-16
Identities = 40/147 (27%), Positives = 76/147 (51%), Gaps = 2/147 (1%)
Frame = +2
Query: 278 PAIRXVMVGMGQKDSYVGDEAQSKRGI--LTLKYPIEHGIVTNWDDMEKIWHHTFYNELR 451
P+ V + ++ YV DE Q I + +K +GI+ +W+ W +L+
Sbjct: 37 PSYYGVRSDVTGRNKYVVDELQIHAPIPGMEVKNGKSNGIIQDWESTLYTWERGLKEKLQ 96
Query: 452 VAPEEHPVLLTEAPLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDS 631
V P E+ +++TE NP++ R+++ + FE + PA Y+ QAV +A+ ++T +++D
Sbjct: 97 VNPTEYAMMITEPSWNPQSVRQQIMEAAFEQLHVPAFYLTKQAVCVAFANSKSTALIVDI 156
Query: 632 GDGVSHTVPIYEGYALPHAILRLDLAG 712
G + P+ +G + I + LAG
Sbjct: 157 GSDNASVTPVVDGLIIRKGIFKQSLAG 183
Score = 35.1 bits (77), Expect = 0.013
Identities = 13/34 (38%), Positives = 23/34 (67%)
Frame = +3
Query: 171 KKLPRLVVDNGSGMCKAGFAGDDAPRAVFPSXRG 272
+++P LV+D GS + G+AG+++P + PS G
Sbjct: 8 EEIPSLVIDPGSCWTRFGYAGEESPMTILPSYYG 41
>SPAC1071.06 |arp9||SWI/SNF and RSC complex subunit
Arp9|Schizosaccharomyces pombe|chr 1|||Manual
Length = 523
Score = 64.9 bits (151), Expect = 1e-11
Identities = 39/127 (30%), Positives = 61/127 (48%), Gaps = 4/127 (3%)
Frame = +2
Query: 374 PIEHGIVTNWDDMEKIWHHTFYNELRVAPEE----HPVLLTEAPLNPKANREKMTQIMFE 541
PI+ G V +W+ ++ W H Y+ L P + +PV L +RE TQ FE
Sbjct: 113 PIQRGRVVDWEALKAFWKH-LYSLLLKDPNDTTFRYPVCLVIPTYWSLYDRELATQFFFE 171
Query: 542 TFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHAILRLDLAGRDL 721
P +A + ++ LYA G G+V+D G + PI +G + A +L L GR +
Sbjct: 172 ECQVPGFTIAYEPLMGLYAIGILHGLVIDIGYEKTDITPILDGQIIFTATQQLPLGGRYM 231
Query: 722 TDYLMKI 742
T +L +
Sbjct: 232 TQHLQNL 238
>SPCC550.12 |arp6||actin-like protein Arp6|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 401
Score = 44.4 bits (100), Expect = 2e-05
Identities = 36/158 (22%), Positives = 67/158 (42%), Gaps = 18/158 (11%)
Frame = +2
Query: 323 YVGDEAQSKRGILTLKYPIEH--GIVTNWDDMEKIWHHTFYNELRVAPE--EHPVLLTEA 490
++G+E + TL++ H G + +W +W N + P ++ +LLT+
Sbjct: 43 FLGNELANCNDFTTLQFRRAHEKGYLVHWSTETAVWDLVMRNVGVMEPSMADYSLLLTQP 102
Query: 491 PLNPKANREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTG--------------IVLD 628
+ Q++FE F A A L + G T +V+D
Sbjct: 103 VFTMPSIEHNTIQLVFEEFQFDAYLPCTPAELIPWDHGSFTMNQEDAYTGQHGECVLVID 162
Query: 629 SGDGVSHTVPIYEGYALPHAILRLDLAGRDLTDYLMKI 742
SG +H +P+ + A+ R+D+ G+ LT+YL ++
Sbjct: 163 SGYSFTHIIPVIDFSVQEQAVKRVDVGGKLLTNYLKEV 200
Score = 27.5 bits (58), Expect = 2.7
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +1
Query: 778 EREIVRDIKEXLCYVXLDFXQEM 846
E IV +IKE +CYV +F ++M
Sbjct: 211 ETYIVNEIKESVCYVSQNFKEDM 233
>SPAC664.02c |||actin-like protein Arp8 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 620
Score = 35.5 bits (78), Expect = 0.010
Identities = 27/138 (19%), Positives = 64/138 (46%), Gaps = 12/138 (8%)
Frame = +2
Query: 365 LKYPIEHGIVTNWD---------DMEKIWHHTFYNELRVAPEE---HPVLLTEAPLNPKA 508
L YPI+ G+ D D+ +I+ ++ + L++ + + V+ L +
Sbjct: 198 LFYPIKSGVFNESDYASSQQLLADIYEIFKYSITSLLQIPVSQLSQYSVIFIVPDLYDRV 257
Query: 509 NREKMTQIMFETFNTPAMYVAIQAVLSLYASGRTTGIVLDSGDGVSHTVPIYEGYALPHA 688
EK+ I+F + + +++ + + +G + V+D G + + EG +P++
Sbjct: 258 YVEKILDILFFDLHFGKAAIVQESLCTSFGAGMSAACVVDMGAQKTSISCVEEGVVVPNS 317
Query: 689 ILRLDLAGRDLTDYLMKI 742
++++ G D+T MK+
Sbjct: 318 RIKINYGGDDITLLFMKL 335
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 32.3 bits (70), Expect = 0.094
Identities = 17/45 (37%), Positives = 21/45 (46%)
Frame = +3
Query: 558 PCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPS 692
P T+P P T PV P S P+ P P PS++ P PS
Sbjct: 1037 PSTAPPVPIPTSTPPV-PKSSSGAPSAPPPVPAPSSEIPSIPAPS 1080
Score = 31.9 bits (69), Expect = 0.12
Identities = 21/58 (36%), Positives = 27/58 (46%)
Frame = +3
Query: 549 TRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 722
++P TSP+ P +R P VP +S P P P PS P PS P+ TS
Sbjct: 997 SKPVSTSPAAPLARV--PPVPKLSSKAP----PVPLPSADAPPIPVPSTAPPVPIPTS 1048
Score = 28.3 bits (60), Expect = 1.5
Identities = 18/51 (35%), Positives = 21/51 (41%), Gaps = 5/51 (9%)
Frame = +3
Query: 555 PPCTSPSKPCSRCTRPVVPPVSCWTP-----ATVSPTPCPSTKDTHSPTPS 692
PP +P P P VPP S P A + P P P+ K P PS
Sbjct: 1193 PPSEAPPVPKPSVGVPPVPPPSTAPPVPTPSAGLPPVPVPTAKAPPVPAPS 1243
Score = 26.6 bits (56), Expect = 4.7
Identities = 17/48 (35%), Positives = 19/48 (39%), Gaps = 2/48 (4%)
Frame = +3
Query: 555 PPCTSPSKPCSRCTRP--VVPPVSCWTPATVSPTPCPSTKDTHSPTPS 692
PP PS +P VPPV P+ P P PS P PS
Sbjct: 1092 PPVPKPSVAAPPVPKPSVAVPPVPA--PSGAPPVPKPSVAAPPVPVPS 1137
Score = 25.8 bits (54), Expect = 8.2
Identities = 17/48 (35%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Frame = +3
Query: 555 PPCTSPSKPCSRCTRPV--VPPVSCWTPATVSPTPCPSTKDTHSPTPS 692
PP +PS +P VPPV P+ P P PS P PS
Sbjct: 1169 PPVPAPSSGIPPVPKPAAGVPPVP--PPSEAPPVPKPSVGVPPVPPPS 1214
>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1666
Score = 31.9 bits (69), Expect = 0.12
Identities = 19/53 (35%), Positives = 31/53 (58%), Gaps = 5/53 (9%)
Frame = +2
Query: 434 FYNELRVAPEEHPVLLTE--APLNPKANREKMTQIMFETFNTPAM---YVAIQ 577
+Y L E+HP+LLT+ A L P+ + ++ +I ++ NTP + VAIQ
Sbjct: 1399 YYRALNFYLEQHPMLLTDLLAALTPRIDHPRVIRIFEKSENTPLILNFMVAIQ 1451
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 30.7 bits (66), Expect = 0.29
Identities = 22/67 (32%), Positives = 29/67 (43%), Gaps = 1/67 (1%)
Frame = +3
Query: 534 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*P 710
C+ ++ PP T S S P VPP S T + PT ST SP P+ +
Sbjct: 172 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCT 230
Query: 711 VATSQTT 731
+TS T
Sbjct: 231 TSTSIPT 237
Score = 29.1 bits (62), Expect = 0.88
Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = +3
Query: 534 CSKHSTRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*P 710
C+ ++ PP T S S P VPP S T + PT ST +P P+ +
Sbjct: 115 CTTSTSIPP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSNPLPTTSTSCT 173
Query: 711 VATS 722
+TS
Sbjct: 174 TSTS 177
Score = 27.9 bits (59), Expect = 2.0
Identities = 20/66 (30%), Positives = 29/66 (43%)
Frame = +3
Query: 537 SKHSTRPPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVA 716
S ST PP S S + + + SC T ++ PT +T T + P+ T
Sbjct: 365 SSTSTPPPPASTSSTGTSSSPLLSTSTSCTTSTSIPPTGNSTTPVTPTVPPTSSSTPLTT 424
Query: 717 TSQTTS 734
T+ TTS
Sbjct: 425 TNCTTS 430
Score = 26.6 bits (56), Expect = 4.7
Identities = 21/60 (35%), Positives = 25/60 (41%), Gaps = 1/60 (1%)
Frame = +3
Query: 546 STRPPCTSPSKPCSRCTRPVVPPVS-CWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATS 722
ST P T S S P VPP S T + PT ST SP P+ + +TS
Sbjct: 232 STSIP-TGGSSSLSTPITPTVPPTSTSSTSIPIPPTSTSSTDTNSSPLPTTSTSCTTSTS 290
>SPCC18.03 |||shuttle craft like transcriptional
regulator|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1077
Score = 29.5 bits (63), Expect = 0.67
Identities = 13/35 (37%), Positives = 16/35 (45%)
Frame = +3
Query: 579 PCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSP 683
PC+ + PPV+C TP P C K H P
Sbjct: 621 PCTCGRTRLYPPVACGTPIPDCPYLCVLPKSCHHP 655
>SPAPB1A10.09 |ase1||microtubule-associated protein Ase1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 731
Score = 29.5 bits (63), Expect = 0.67
Identities = 24/79 (30%), Positives = 35/79 (44%), Gaps = 1/79 (1%)
Frame = +3
Query: 588 RCTRPVVPPVSCWTPATVSP-TPCPSTKDTHSPTPSCVWT*PVATSQTTS*RSHRARLLV 764
R P P V + A SP TP P K+T +P+ S P ATS T+ R H +
Sbjct: 500 RVAVPSTPSVRSASRAMTSPRTPLPRVKNTQNPSRSISAEPPSATS--TANRRHPTANRI 557
Query: 765 HYHRRAGNRS*HQGEXVLR 821
+ R + S + ++R
Sbjct: 558 DINARLNSASRSRSANMIR 576
>SPAC821.09 |eng1||endo-1,3-beta-glucanase Eng1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1016
Score = 27.5 bits (58), Expect = 2.7
Identities = 19/57 (33%), Positives = 29/57 (50%)
Frame = +3
Query: 561 CTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*PVATSQTT 731
C +PS+ C + PV + T S TP P+T + +PTP+ T T+Q+T
Sbjct: 825 CYNPSQ--YGCDNGALGPVQS-SSTTSSITPTPTTTSSITPTPTTTST--TTTAQST 876
>SPCC757.09c |rnc1||RNA-binding protein that suppresses calcineurin
deletion Rnc1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 398
Score = 27.1 bits (57), Expect = 3.6
Identities = 13/29 (44%), Positives = 16/29 (55%)
Frame = +3
Query: 579 PCSRCTRPVVPPVSCWTPATVSPTPCPST 665
P SR T+P+ S +P VSP PST
Sbjct: 262 PVSRLTQPLPSLASTASPQQVSPPAAPST 290
>SPBC21D10.12 |hob1||BAR adaptor protein Hob1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 466
Score = 27.1 bits (57), Expect = 3.6
Identities = 12/36 (33%), Positives = 15/36 (41%)
Frame = +3
Query: 555 PPCTSPSKPCSRCTRPVVPPVSCWTPATVSPTPCPS 662
PP P + T PV PV+ A P P P+
Sbjct: 367 PPPVMPQPAAAAVTTPVAAPVAAAAAAVPVPPPAPA 402
>SPBC115.01c |rrp46||exosome subunit Rrp46 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 226
Score = 26.2 bits (55), Expect = 6.2
Identities = 10/25 (40%), Positives = 18/25 (72%)
Frame = +2
Query: 476 LLTEAPLNPKANREKMTQIMFETFN 550
+L APL+ + +KM +++FET+N
Sbjct: 181 VLETAPLHAEEVSKKMKELLFETYN 205
>SPAC1D4.14 |tho2|SPAC22F3.14c|THO complex subunit Tho2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1628
Score = 26.2 bits (55), Expect = 6.2
Identities = 20/82 (24%), Positives = 38/82 (46%)
Frame = +1
Query: 490 SPQPQGQQREDDPDHVRNIQHARHVRRHPSRALAVRVRSYHRYRAGLRRRCLPHRAHLRR 669
+PQ + E++ D++R++ +RH RR P +A + R H + R R ++ R
Sbjct: 1428 TPQSRSFTNENN-DNLRSV--SRHTRREPQQAQNLNARREHESQKSDRWR---QNGNVNR 1481
Query: 670 IRTPPRHPASGLSRSRPHRLPH 735
+ ++ +SR R H
Sbjct: 1482 NPRVSNNNSTNVSRERSSEANH 1503
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 25.8 bits (54), Expect = 8.2
Identities = 20/81 (24%), Positives = 27/81 (33%), Gaps = 4/81 (4%)
Frame = +3
Query: 555 PPCTSPSKPCSRCTRPVVPPVSCWTP----ATVSPTPCPSTKDTHSPTPSCVWT*PVATS 722
PP PS P P +PP + P + P P P P+ PVA+
Sbjct: 432 PPSAPPSLPMGAPAAPPLPPSAPIAPPLPAGMPAAPPLPPAAPAPPPAPAPAPAAPVASI 491
Query: 723 QTTS*RSHRARLLVHYHRRAG 785
+ RA L+ G
Sbjct: 492 AELPQQDGRANLMASIRASGG 512
>SPBC4C3.12 |sep1||fork head transcription factor
Sep1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 663
Score = 25.8 bits (54), Expect = 8.2
Identities = 16/52 (30%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
Frame = +3
Query: 576 KPCSRCTRPVVPPVSCWTPATVSPTPCPSTKDTHSPTPSCVWT*P-VATSQT 728
KP S+ TRP +P +T T S P P + + ++ P V++SQ+
Sbjct: 65 KPSSKATRPYIP---SYTRLTYSVPPLPIPPPSEQSLDTIIYRNPSVSSSQS 113
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 3,427,975
Number of Sequences: 5004
Number of extensions: 73831
Number of successful extensions: 283
Number of sequences better than 10.0: 22
Number of HSP's better than 10.0 without gapping: 226
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 274
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 444486180
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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