Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B19
         (861 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z36719-2|CAA85317.2|  421|Caenorhabditis elegans Hypothetical pr...    31   1.4  
Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical pr...    29   4.3  
Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical pr...    29   4.3  
U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (gr...    29   4.3  
AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine...    29   4.3  
AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine...    29   4.3  
AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal elemen...    28   9.8  

>Z36719-2|CAA85317.2|  421|Caenorhabditis elegans Hypothetical
           protein C06C3.4 protein.
          Length = 421

 Score = 30.7 bits (66), Expect = 1.4
 Identities = 14/30 (46%), Positives = 15/30 (50%)
 Frame = +1

Query: 16  ASPTRAXLXSFALXPCXXSCXCSFTXCXFS 105
           ASP R  +    L PC   C CSF  C FS
Sbjct: 201 ASPVRV-IHKKLLLPCACDCTCSFKSCNFS 229


>Z83120-8|CAE46678.2|  511|Caenorhabditis elegans Hypothetical
           protein R06A4.10b protein.
          Length = 511

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 715 RQVRKRRPVLHLQSPIQRCLXARYDRERLGRPQGRWTR 828
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347


>Z83120-7|CAB51466.2|  514|Caenorhabditis elegans Hypothetical
           protein R06A4.10a protein.
          Length = 514

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 715 RQVRKRRPVLHLQSPIQRCLXARYDRERLGRPQGRWTR 828
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 310 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 347


>U00058-3|AAD31933.1|  162|Caenorhabditis elegans Ground-like (grd
           related) protein22 protein.
          Length = 162

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 23/72 (31%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
 Frame = -2

Query: 524 CLSTPSP*AILSFRGIGCGTELQS--EVVVSVN-DLDIVSGHDESKV*WEVLSNNXLSVA 354
           C   P P       G GCG + +S  +V   +N D D+   ++E +   EVL NN  S  
Sbjct: 49  CAPPPPPPPPPPMCGCGCGRKKRSVDDVEGVINMDSDVECNNEELR---EVLENNMKSTP 105

Query: 353 DPQLVAVLHGVP 318
              LV+V   +P
Sbjct: 106 SDSLVSVRSNLP 117


>AY523516-1|AAR98638.1|  459|Caenorhabditis elegans acetylcholine
           receptor alternativevariant b protein.
          Length = 459

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 715 RQVRKRRPVLHLQSPIQRCLXARYDRERLGRPQGRWTR 828
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 255 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 292


>AY523515-1|AAR98637.1|  553|Caenorhabditis elegans acetylcholine
           receptor 20 (63.9kD) alternative variant a protein.
          Length = 553

 Score = 29.1 bits (62), Expect = 4.3
 Identities = 12/38 (31%), Positives = 21/38 (55%)
 Frame = +1

Query: 715 RQVRKRRPVLHLQSPIQRCLXARYDRERLGRPQGRWTR 828
           R +R   P++  Q+  Q+    +  R+++GR Q  WTR
Sbjct: 352 RFIRMEMPLIMKQAYAQKAREEKLRRQQMGRKQSLWTR 389


>AF016669-1|AAB66098.3| 1758|Caenorhabditis elegans Signal element
           on autosome protein2 protein.
          Length = 1758

 Score = 27.9 bits (59), Expect = 9.8
 Identities = 23/67 (34%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
 Frame = +2

Query: 356 QRTGNC*KVLPIKL*THHGRKLCQDHLQKLQP-RSEARFHNQSLEMRELPTAMV*TSILN 532
           QRT       P+K+    G+   Q   Q  Q  RS A   N +L+ + LP     TSI +
Sbjct: 151 QRTPTQQLQYPVKVVEAGGQAYAQQVQQAQQSNRSGAAGVNSALQPKPLPPLSSITSISS 210

Query: 533 SSVGSSL 553
           S+ GSS+
Sbjct: 211 SAAGSSI 217


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,783,416
Number of Sequences: 27780
Number of extensions: 240143
Number of successful extensions: 658
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 601
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 657
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2150453690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)