Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B16
         (865 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_06_0147 + 21195222-21195377,21195471-21195522,21196842-212043...    30   2.1  
05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676     30   2.1  
05_05_0226 + 23442971-23443857,23444209-23446324                       30   2.7  
07_03_0265 + 15976331-15976645,15977575-15977784,15977869-159779...    29   6.3  
10_06_0170 + 11431540-11432259,11434552-11434644,11434739-114348...    28   8.4  

>09_06_0147 + 21195222-21195377,21195471-21195522,21196842-21204362,
            21204453-21205031,21205176-21205484,21205638-21205718,
            21205971-21206279,21207430-21207816,21207964-21208767,
            21208856-21209218,21209437-21209667,21209934-21210278,
            21210494-21210712,21210759-21210815,21210978-21211322,
            21211538-21211756,21211803-21211859,21212022-21212366,
            21212584-21212814,21213100-21213458
          Length = 4322

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 16/41 (39%), Positives = 20/41 (48%)
 Frame = +2

Query: 410  ATSRSSTRETILPSNSVLRQTQITTESHTAMPTTRAARTSA 532
            +  R S+R   LPS+   R  QI    HTA P + AA   A
Sbjct: 2768 SAGRDSSRAAQLPSSDEPRNEQIKDSDHTAQPFSSAAPDQA 2808


>05_06_0095 - 25482796-25483019,25483470-25484093,25484427-25484676
          Length = 365

 Score = 30.3 bits (65), Expect = 2.1
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -2

Query: 453 FDGKIVSLVDDLDVALG*HLSKLNREVVFDDFLTLP 346
           F+ K+V LVD  +   G H + +N   +FDD L  P
Sbjct: 253 FNQKLVGLVDQFNTLPGAHFTYINIYGIFDDILGAP 288


>05_05_0226 + 23442971-23443857,23444209-23446324
          Length = 1000

 Score = 29.9 bits (64), Expect = 2.7
 Identities = 17/61 (27%), Positives = 30/61 (49%)
 Frame = +1

Query: 115 LAASAGLIDLDINILSAPTRAETRLVDAITTADYNTAVSLILLLEKQSSGSXIEDTVNNL 294
           LA  A  + LD+ +++A    + R +   TTAD  TAV+ +   E       +E+ V+  
Sbjct: 31  LAQEAQSLQLDLRMIAAVMDDQLRAMGRATTADARTAVARLHAEEMLDLAHDVEECVDRF 90

Query: 295 I 297
           +
Sbjct: 91  L 91


>07_03_0265 +
           15976331-15976645,15977575-15977784,15977869-15977916,
           15978307-15978675,15978736-15978747,15978763-15978870,
           15979156-15979493,15980313-15980430,15983247-15984107,
           15984457-15984750
          Length = 890

 Score = 28.7 bits (61), Expect = 6.3
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = -2

Query: 213 IGSGDSIDEPRFRSGRSGQNVNVQVNKTGAGRQHA 109
           +G GD  DE R R+ +S +  N+ V +  AG +HA
Sbjct: 272 LGHGDQHDELRPRAIQSFKRRNIHVVRVSAGDEHA 306


>10_06_0170 +
           11431540-11432259,11434552-11434644,11434739-11434806,
           11434873-11435011,11435179-11435229,11435600-11435675,
           11436216-11436274
          Length = 401

 Score = 28.3 bits (60), Expect = 8.4
 Identities = 13/36 (36%), Positives = 17/36 (47%)
 Frame = +2

Query: 341 GSGRVRKSSNTTSLFSLDRCYPRATSRSSTRETILP 448
           G GR R     +   + DRCY RA   +  R T +P
Sbjct: 17  GGGRRRWQKRLSPTLARDRCYTRAFRSAGLRPTAVP 52


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,697,229
Number of Sequences: 37544
Number of extensions: 399228
Number of successful extensions: 991
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 971
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 991
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2420970504
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)