Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B14
         (897 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.31 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    22   6.6  
DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex det...    22   6.6  
S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor prot...    22   8.7  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 26.6 bits (56), Expect = 0.31
 Identities = 13/41 (31%), Positives = 13/41 (31%)
 Frame = +2

Query: 740 PSXXPXPPXXXXXPPPXXPXLPXPPXPXXXXPPXPPPXXXP 862
           PS     P       P  P    PP P    PP  PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.8 bits (49), Expect = 2.2
 Identities = 10/32 (31%), Positives = 11/32 (34%)
 Frame = +1

Query: 733 PXPXNXPXPPXXXXXPSXXXPPPPXXPXPLXP 828
           P P   P  P     P+    PPP  P    P
Sbjct: 25  PSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPP 56



 Score = 23.0 bits (47), Expect = 3.8
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +3

Query: 738 PXQXTPPPPPXXXPLXPXAPXSXXPXPPXXXXPXPPPLXXPPLXPP 875
           P    P P P      P AP    P  P    P   P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQ-SPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 7/11 (63%), Positives = 7/11 (63%)
 Frame = +3

Query: 735 PPXQXTPPPPP 767
           PP    PPPPP
Sbjct: 338 PPKPAPPPPPP 348


>DQ325118-1|ABD14132.1|  181|Apis mellifera complementary sex
           determiner protein.
          Length = 181

 Score = 22.2 bits (45), Expect = 6.6
 Identities = 9/27 (33%), Positives = 15/27 (55%)
 Frame = -2

Query: 287 KPLYPKRTARDFRPRGHCIRTPCGYPR 207
           +P+ P  + ++  PR  CI  P  +PR
Sbjct: 133 RPMGPWISVQEQVPRFRCIGPPTPFPR 159


>S76959-1|AAB33934.1|   85|Apis mellifera olfactory receptor
           protein.
          Length = 85

 Score = 21.8 bits (44), Expect = 8.7
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +2

Query: 326 ICSIYLFIIHYCALLFKXYILNSDEFYFK 412
           I S  + +I Y  +LF    ++S E +FK
Sbjct: 20  IVSSLIILISYALILFNILHMSSAEGWFK 48


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 217,126
Number of Sequences: 438
Number of extensions: 8762
Number of successful extensions: 18
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 17
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 29025360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)