Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B08
         (1007 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholo...    24   1.6  
U77974-1|AAB36556.1|  276|Tribolium castaneum transcription fact...    22   6.5  
AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain tran...    22   8.6  

>AF219117-1|AAF71999.1|  406|Tribolium castaneum tailless ortholog
           protein.
          Length = 406

 Score = 24.2 bits (50), Expect = 1.6
 Identities = 14/46 (30%), Positives = 14/46 (30%)
 Frame = +1

Query: 688 PXPXXXPPXXXXPPPPXXXXPXPXPXXPPPXPXPPXXXXPPXXXXP 825
           P P    P    PP        P     PP P PP    PP    P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPP--IFPPTMINP 196



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 14/49 (28%), Positives = 14/49 (28%)
 Frame = +2

Query: 677 PXXXPXPPXXPPXXXXPPXPXPXXPXPXPXXPPPXPPPXPXXXPXXXXP 823
           P   P P    P    PP        P     PP P P P   P    P
Sbjct: 149 PKYEPNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLP-PIFPPTMINP 196



 Score = 21.8 bits (44), Expect = 8.6
 Identities = 12/44 (27%), Positives = 12/44 (27%)
 Frame = +1

Query: 754 PXPXXPPPXPXPPXXXXPPXXXXPXPXXXXXPXPPXXPXXXXXP 885
           P P    P P  P          P P     P PP  P     P
Sbjct: 153 PNPSIIDPGPALPPTGFLCNNYPPLPQVPPLPLPPIFPPTMINP 196


>U77974-1|AAB36556.1|  276|Tribolium castaneum transcription factor
           homolog protein.
          Length = 276

 Score = 22.2 bits (45), Expect = 6.5
 Identities = 10/32 (31%), Positives = 10/32 (31%)
 Frame = +2

Query: 614 PXXXPPPPPXXXXXPXXXXPXPXXXPXPPXXP 709
           P   PPPPP          P P     P   P
Sbjct: 159 PLHYPPPPPVYTHHYARYHPYPNFGVPPAGIP 190


>AY043292-1|AAK96031.1|  323|Tribolium castaneum homeodomain
           transcription factor Prothoraxlessprotein.
          Length = 323

 Score = 21.8 bits (44), Expect = 8.6
 Identities = 9/25 (36%), Positives = 9/25 (36%)
 Frame = +3

Query: 726 PPXXXXXPPXXPPXPPPXPXPPXPP 800
           PP     PP     P   P P  PP
Sbjct: 61  PPHHYGGPPSGGQPPQGMPYPRFPP 85


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 113,367
Number of Sequences: 336
Number of extensions: 3529
Number of successful extensions: 13
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 122,585
effective HSP length: 57
effective length of database: 103,433
effective search space used: 28754374
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)