Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B08
         (1007 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       27   0.27 
DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chlor...    23   3.3  

>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 27.1 bits (57), Expect = 0.27
 Identities = 13/45 (28%), Positives = 13/45 (28%)
 Frame = +2

Query: 656 PXXXXPXPXXXPXPPXXPPXXXXPPXPXPXXPXPXPXXPPPXPPP 790
           P    P P   P      P    PP P    P   P   PP   P
Sbjct: 16  PSSGAPGPQPSPHQSPQAPQRGSPPNPSQGPPPGGPPGAPPSQNP 60



 Score = 25.0 bits (52), Expect = 1.1
 Identities = 12/33 (36%), Positives = 12/33 (36%)
 Frame = +2

Query: 728 PXPXPXXPXPXPXXPPPXPPPXPXXXPXXXXPP 826
           P P P  P   P  P    PP P   P    PP
Sbjct: 21  PGPQPS-PHQSPQAPQRGSPPNPSQGPPPGGPP 52



 Score = 23.8 bits (49), Expect = 2.5
 Identities = 9/22 (40%), Positives = 9/22 (40%)
 Frame = +3

Query: 759 PPXPPPXPXPPXPPXPPXPXXP 824
           PP P   P P  PP  P    P
Sbjct: 39  PPNPSQGPPPGGPPGAPPSQNP 60


>DQ667187-1|ABG75739.1|  428|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 428

 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +2

Query: 611 PPXXXPPPPPXXXXXP 658
           PP   PPPPP     P
Sbjct: 338 PPKPAPPPPPPSSSGP 353



 Score = 23.4 bits (48), Expect = 3.3
 Identities = 8/16 (50%), Positives = 8/16 (50%)
 Frame = +3

Query: 759 PPXPPPXPXPPXPPXP 806
           PP P P P PP    P
Sbjct: 338 PPKPAPPPPPPSSSGP 353


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 185,555
Number of Sequences: 438
Number of extensions: 11504
Number of successful extensions: 18
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 13
length of database: 146,343
effective HSP length: 58
effective length of database: 120,939
effective search space used: 33500103
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)