Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_B07
(851 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1576 + 27965862-27965864,27965952-27966026,27966113-279662... 89 3e-18
09_06_0339 - 22400534-22400647,22401264-22401398,22401491-224015... 89 5e-18
11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,249... 59 4e-09
05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938 35 0.095
05_03_0496 + 14706959-14707020,14707173-14707538,14708070-147082... 33 0.22
>08_02_1576 +
27965862-27965864,27965952-27966026,27966113-27966247,
27967080-27967193
Length = 108
Score = 89.4 bits (212), Expect = 3e-18
Identities = 44/89 (49%), Positives = 56/89 (62%)
Frame = +3
Query: 135 SGGGXAKXXXWSXGXVRXKLXXXVLFDKPTYXXLYKXVPQYKLITPAVVSEXLKVRGSLA 314
SGGG K WS G + K+ VLFD+ TY L VP+YK ITP+V+SE L++ GSLA
Sbjct: 18 SGGGKQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLA 77
Query: 315 RXALIELRXKGLIKQVVQHHGXVXYTRAT 401
R A+ +L +GLI+ V H YTRAT
Sbjct: 78 RRAINDLMTRGLIRMVSVHSSQQIYTRAT 106
>09_06_0339 -
22400534-22400647,22401264-22401398,22401491-22401565,
22401646-22401648
Length = 108
Score = 88.6 bits (210), Expect = 5e-18
Identities = 44/89 (49%), Positives = 56/89 (62%)
Frame = +3
Query: 135 SGGGXAKXXXWSXGXVRXKLXXXVLFDKPTYXXLYKXVPQYKLITPAVVSEXLKVRGSLA 314
SGGG K WS G + K+ VLFD+ TY L VP+YK ITP+V+SE L++ GSLA
Sbjct: 18 SGGGKQKKKKWSKGKQKEKVNNSVLFDQATYDKLLSEVPKYKQITPSVLSERLRINGSLA 77
Query: 315 RXALIELRXKGLIKQVVQHHGXVXYTRAT 401
R A+ +L +GLI+ V H YTRAT
Sbjct: 78 RRAMKDLMDRGLIRMVSVHCSQQIYTRAT 106
>11_01_0334 + 2495275-2495433,2495553-2495661,2496311-2496378,
2496476-2496577,2496853-2497003,2497173-2497222,
2497432-2497557,2497761-2497863,2498104-2498204,
2498540-2498677,2498768-2498911,2499028-2499103,
2499224-2499309,2499432-2499560,2500572-2500674,
2500776-2500843,2500912-2501013,2501432-2501527,
2501723-2501848,2502152-2502254,2502427-2502569,
2503017-2503154,2503248-2503391,2503535-2503610,
2503883-2503968,2504135-2504212,2505180-2505254,
2505362-2505496,2506240-2506272,2507886-2507905,
2508570-2508666,2508899-2509000,2510612-2510725
Length = 1126
Score = 59.3 bits (137), Expect = 4e-09
Identities = 28/54 (51%), Positives = 34/54 (62%)
Frame = +3
Query: 135 SGGGXAKXXXWSXGXVRXKLXXXVLFDKPTYXXLYKXVPQYKLITPAVVSEXLK 296
SGGG K WS G + K+ VLFDK TY L VP+YK ITP+V+SE L+
Sbjct: 952 SGGGKQKKKKWSKGKQKEKVNNSVLFDKATYDKLLSEVPKYKQITPSVLSERLR 1005
Score = 34.7 bits (76), Expect = 0.095
Identities = 16/35 (45%), Positives = 22/35 (62%)
Frame = +3
Query: 297 VRGSLARXALIELRXKGLIKQVVQHHGXVXYTRAT 401
+ GSLAR A+ +L +G I+ V H + YTRAT
Sbjct: 1090 INGSLARQAIKDLESRGAIRVVSVHSSQLIYTRAT 1124
>05_05_0233 + 23496405-23496932,23497346-23497621,23497747-23497938
Length = 331
Score = 34.7 bits (76), Expect = 0.095
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3
Query: 510 FXFFFFXFFFFXFXXXFXVFIFF 442
F FFFF FFFF F F F FF
Sbjct: 62 FFFFFFFFFFFFFFFFFFFFFFF 84
Score = 34.7 bits (76), Expect = 0.095
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3
Query: 510 FXFFFFXFFFFXFXXXFXVFIFF 442
F FFFF FFFF F F F FF
Sbjct: 63 FFFFFFFFFFFFFFFFFFFFFFF 85
Score = 34.7 bits (76), Expect = 0.095
Identities = 14/23 (60%), Positives = 14/23 (60%)
Frame = -3
Query: 510 FXFFFFXFFFFXFXXXFXVFIFF 442
F FFFF FFFF F F F FF
Sbjct: 64 FFFFFFFFFFFFFFFFFFFFFFF 86
>05_03_0496 +
14706959-14707020,14707173-14707538,14708070-14708209,
14708319-14708566,14708814-14708946,14709096-14709159,
14709284-14709380,14709505-14709607,14709702-14709838,
14710063-14710152,14710240-14710401
Length = 533
Score = 33.5 bits (73), Expect = 0.22
Identities = 13/23 (56%), Positives = 14/23 (60%)
Frame = -3
Query: 510 FXFFFFXFFFFXFXXXFXVFIFF 442
+ FFFF FFFF F F F FF
Sbjct: 85 YAFFFFFFFFFFFFFFFFFFFFF 107
Score = 32.7 bits (71), Expect = 0.38
Identities = 13/21 (61%), Positives = 13/21 (61%)
Frame = -3
Query: 504 FFFFXFFFFXFXXXFXVFIFF 442
FFFF FFFF F F F FF
Sbjct: 88 FFFFFFFFFFFFFFFFFFFFF 108
Score = 32.3 bits (70), Expect = 0.50
Identities = 13/22 (59%), Positives = 13/22 (59%)
Frame = -3
Query: 510 FXFFFFXFFFFXFXXXFXVFIF 445
F FFFF FFFF F F F F
Sbjct: 87 FFFFFFFFFFFFFFFFFFFFFF 108
Score = 29.5 bits (63), Expect = 3.6
Identities = 14/33 (42%), Positives = 16/33 (48%)
Frame = -3
Query: 504 FFFFXFFFFXFXXXFXVFIFF*LIS*FMRLXHR 406
+ FF FFFF F F F FF S + HR
Sbjct: 85 YAFFFFFFFFFFFFFFFFFFFFFFSGDVYCGHR 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,543,949
Number of Sequences: 37544
Number of extensions: 175266
Number of successful extensions: 894
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 503
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2373961368
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -