Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MFBP09_F_B03
(878 letters)
Database: uniref50
1,657,284 sequences; 575,637,011 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellu... 149 9e-35
UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishma... 133 6e-30
UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1; Ostreoc... 111 2e-23
UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15; Archa... 87 6e-16
UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2; Thermo... 85 2e-15
UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|R... 81 4e-14
UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiell... 79 2e-13
UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultu... 76 1e-12
UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole ge... 75 2e-12
UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1; ... 64 3e-09
UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3; ... 60 6e-08
UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3; ... 50 6e-05
UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n... 46 0.001
UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15; Bacter... 44 0.004
UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular or... 43 0.012
UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis... 42 0.021
UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48; Bacter... 42 0.027
UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639... 41 0.048
UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellu... 41 0.048
UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellul... 40 0.11
UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps... 39 0.19
UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putati... 38 0.44
UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellu... 37 0.59
UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33; Bacter... 36 1.8
UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus ... 35 2.4
UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29; ... 35 3.1
UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;... 34 4.1
UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1; Neorick... 33 7.2
UniRef50_P03087 Cluster: Capsid protein VP1; n=1927; Polyomaviru... 33 9.6
>UniRef50_P62263 Cluster: 40S ribosomal protein S14; n=231; cellular
organisms|Rep: 40S ribosomal protein S14 - Homo sapiens
(Human)
Length = 151
Score = 149 bits (361), Expect = 9e-35
Identities = 76/103 (73%), Positives = 80/103 (77%)
Frame = +3
Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
LGPQ G VFGV FASFN TFVHVTDLSG+ETI RVTGGMKVKADRDE+SPYAAML
Sbjct: 17 LGPQVAEGENVFGVCHIFASFNDTFVHVTDLSGKETICRVTGGMKVKADRDESSPYAAML 76
Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
AAQDVA++CK LGITALHIKLRA AQSALRAL
Sbjct: 77 AAQDVAQRCKELGITALHIKLRATGGNRTKTPGPGAQSALRAL 119
>UniRef50_Q4Q6S9 Cluster: 40S ribosomal protein S14; n=1; Leishmania
major|Rep: 40S ribosomal protein S14 - Leishmania major
Length = 203
Score = 133 bits (321), Expect = 6e-30
Identities = 65/117 (55%), Positives = 74/117 (63%)
Frame = +3
Query: 174 GPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLA 353
GP G V+GV FASFN TFVHVTD+SGRET +VTGGMKVKADRDE+SPYAAM+A
Sbjct: 20 GPNVKKGDLVYGVVHIFASFNDTFVHVTDMSGRETYVKVTGGMKVKADRDESSPYAAMMA 79
Query: 354 AQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRALGSFKYEDWPH*RCHP 524
AQDV +CK GI ALH+K+RA + EDWPH CHP
Sbjct: 80 AQDVVARCKECGINALHVKMRAVGGVRTKSPGPGRPGRPPRARPRRDEDWPHRGCHP 136
>UniRef50_Q01E13 Cluster: 40S ribosomal protein S14; n=1;
Ostreococcus tauri|Rep: 40S ribosomal protein S14 -
Ostreococcus tauri
Length = 243
Score = 111 bits (268), Expect = 2e-23
Identities = 55/77 (71%), Positives = 61/77 (79%)
Frame = +3
Query: 249 HVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXX 428
HVTDLSG+ET++R TGGMKVKADRDE+SPYAAMLAAQDVA +CK LGITALHIK+RA
Sbjct: 90 HVTDLSGKETLSRCTGGMKVKADRDESSPYAAMLAAQDVAARCKELGITALHIKMRAKGG 149
Query: 429 XXXXXXXXXAQSALRAL 479
QSALRAL
Sbjct: 150 NKTKSPGPGGQSALRAL 166
Score = 35.5 bits (78), Expect = 1.8
Identities = 17/26 (65%), Positives = 18/26 (69%)
Frame = +3
Query: 171 LGPQHLVGATVFGVAPXFASFNXTFV 248
+GPQ G VFGVA FASFN TFV
Sbjct: 19 VGPQAREGELVFGVAHIFASFNDTFV 44
>UniRef50_P54021 Cluster: 30S ribosomal protein S11P; n=15;
Archaea|Rep: 30S ribosomal protein S11P - Methanococcus
jannaschii
Length = 129
Score = 87.0 bits (206), Expect = 6e-16
Identities = 43/92 (46%), Positives = 58/92 (63%)
Frame = +3
Query: 204 FGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 383
+G+ ++S+N T +H TD++G ETIARV+GG + RDE SPYAAM AA +AE K
Sbjct: 9 WGIVHIYSSYNNTIIHATDITGAETIARVSGGRVTRNQRDEGSPYAAMQAAFKLAEVLKE 68
Query: 384 LGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
GI +HIK+RA AQ+A+RAL
Sbjct: 69 RGIENIHIKVRAPGGSGQKNPGPGAQAAIRAL 100
>UniRef50_A0RWI9 Cluster: 30S ribosomal protein S11P; n=2;
Thermoprotei|Rep: 30S ribosomal protein S11P -
Cenarchaeum symbiosum
Length = 198
Score = 85.0 bits (201), Expect = 2e-15
Identities = 42/97 (43%), Positives = 61/97 (62%), Gaps = 2/97 (2%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A ++S+N T +H+TDL+G ET++ +GG+ V ADR E+SP+AAM AA V E +
Sbjct: 76 GIAHIYSSYNNTIIHMTDLTGAETVSISSGGVHVNADRYESSPFAAMKAANKVIESARAK 135
Query: 387 GITALHIKLRAXXXXXXXXXXXXAQSALRAL--GSFK 491
G T HI++RA AQ+A+RAL G F+
Sbjct: 136 GFTGFHIRVRAVGGVGSRVPGPGAQAAIRALARGGFR 172
>UniRef50_Q58NR0 Cluster: Ribosomal protein S14; n=6; Eukaryota|Rep:
Ribosomal protein S14 - Palaemonetes pugio
Length = 77
Score = 81.0 bits (191), Expect = 4e-14
Identities = 39/54 (72%), Positives = 42/54 (77%)
Frame = +3
Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEAS 332
LGPQ G VF V +AS+N TFVHVTDLSGRETI RVTGG KVKADRDE+S
Sbjct: 17 LGPQVREGENVFAVCHIYASYNDTFVHVTDLSGRETIIRVTGGQKVKADRDESS 70
>UniRef50_Q3LWB9 Cluster: Ribosomal protein S14; n=1; Bigelowiella
natans|Rep: Ribosomal protein S14 - Bigelowiella natans
(Pedinomonas minutissima) (Chlorarachnion sp.(strain
CCMP 621))
Length = 145
Score = 78.6 bits (185), Expect = 2e-13
Identities = 35/73 (47%), Positives = 50/73 (68%)
Frame = +3
Query: 201 VFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 380
+FG+ ++ N T +HVTD++G ETI+R++ G+ +D+ S Y AMLA Q V+ CK
Sbjct: 11 LFGILHILSTKNDTIIHVTDITGSETISRISSGIVATNGKDKKSNYCAMLATQKVSNVCK 70
Query: 381 TLGITALHIKLRA 419
LGI ALHIK+RA
Sbjct: 71 VLGINALHIKIRA 83
>UniRef50_A0SNY7 Cluster: 30S ribosomal protein S11; n=1; uncultured
euryarchaeote ARMAN-2|Rep: 30S ribosomal protein S11 -
uncultured euryarchaeote ARMAN-2
Length = 169
Score = 76.2 bits (179), Expect = 1e-12
Identities = 42/92 (45%), Positives = 55/92 (59%)
Frame = +3
Query: 204 FGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKT 383
+ VA ++S N T + +TDLSG ETIA +GGM V AD E SPYAAM AA VA + K
Sbjct: 46 WAVAHVYSSKNDTIITLTDLSGSETIAVGSGGMMVNADSQEGSPYAAMQAAYKVAAEAKE 105
Query: 384 LGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
GIT ++I++RA AQ+ +R L
Sbjct: 106 KGITNINIEIRAPGGHGSKTPGHGAQAVVRVL 137
>UniRef50_A7QYG3 Cluster: Chromosome chr17 scaffold_246, whole
genome shotgun sequence; n=1; Vitis vinifera|Rep:
Chromosome chr17 scaffold_246, whole genome shotgun
sequence - Vitis vinifera (Grape)
Length = 182
Score = 75.4 bits (177), Expect = 2e-12
Identities = 40/76 (52%), Positives = 49/76 (64%)
Frame = +3
Query: 273 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXX 452
ET+ R TGGMK K D +E+SP AAM AAQDV+++CK L IT LH+KL A
Sbjct: 50 ETLVRTTGGMKEKTDGEESSPCAAMPAAQDVSQECKELDITVLHVKLHAARGNKTKTPGP 109
Query: 453 XAQSALRALGSFKYED 500
AQSAL+A SF E+
Sbjct: 110 GAQSALQAPCSFWNEN 125
>UniRef50_A5BMD1 Cluster: Putative uncharacterized protein; n=1;
Vitis vinifera|Rep: Putative uncharacterized protein -
Vitis vinifera (Grape)
Length = 104
Score = 64.5 bits (150), Expect = 3e-09
Identities = 31/49 (63%), Positives = 38/49 (77%)
Frame = +3
Query: 273 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 419
ET+ R TGGMK KAD +E+SP AAM AAQDV+++ K L IT LH+KL A
Sbjct: 29 ETLVRSTGGMKEKADGEESSPCAAMPAAQDVSQRFKELDITVLHVKLHA 77
>UniRef50_A4D1M5 Cluster: Similar to ribosomal protein S14; n=3;
Homo/Pan/Gorilla group|Rep: Similar to ribosomal protein
S14 - Homo sapiens (Human)
Length = 350
Score = 60.5 bits (140), Expect = 6e-08
Identities = 28/40 (70%), Positives = 33/40 (82%)
Frame = +3
Query: 300 MKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKLRA 419
MK +AD+DE+SP AML AQDV ++CK LGITALHIKL A
Sbjct: 1 MKEQADQDESSPCTAMLTAQDVVQRCKELGITALHIKLLA 40
>UniRef50_A3A282 Cluster: Putative uncharacterized protein; n=3;
Oryza sativa|Rep: Putative uncharacterized protein -
Oryza sativa subsp. japonica (Rice)
Length = 332
Score = 50.4 bits (115), Expect = 6e-05
Identities = 37/73 (50%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
Frame = +3
Query: 288 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK------TLGITALH---IKLRAXXXXXXX 440
V GGMK+KAD DE+SPYAAML +QDVA CK LG L I L A
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270
Query: 441 XXXXXAQSALRAL 479
AQSALRAL
Sbjct: 271 TPGPDAQSALRAL 283
>UniRef50_UPI0000DBF82A Cluster: UPI0000DBF82A related cluster; n=1;
Rattus norvegicus|Rep: UPI0000DBF82A UniRef100 entry -
Rattus norvegicus
Length = 119
Score = 46.4 bits (105), Expect = 0.001
Identities = 31/84 (36%), Positives = 45/84 (53%), Gaps = 2/84 (2%)
Frame = +3
Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGR-ETIARVTGGMKVKADRDEASPYAAM 347
L PQ + G V GV FASF +F++ TD+ G+ T VT MK + E +P +
Sbjct: 7 LRPQVVEGQNVLGVCYIFASFGDSFIYGTDVYGKVNTCQYVTSRMKTQ--YAETNPCHRL 64
Query: 348 LA-AQDVAEKCKTLGITALHIKLR 416
A DV + K + + ALHI+L+
Sbjct: 65 HAGCLDVTHRFKEMSVPALHIRLQ 88
>UniRef50_Q5LW33 Cluster: 30S ribosomal protein S11; n=15;
Bacteria|Rep: 30S ribosomal protein S11 - Silicibacter
pomeroyi
Length = 130
Score = 44.4 bits (100), Expect = 0.004
Identities = 23/70 (32%), Positives = 39/70 (55%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
GVA ++FN T + ++D+ G G M K R +++PYAA LAA+D K +
Sbjct: 20 GVAHVNSTFNNTKILISDVQGNAISWSSAGTMGFKGSR-KSTPYAAQLAAEDAGRKAQDH 78
Query: 387 GITALHIKLR 416
G+ L ++++
Sbjct: 79 GVKTLEVEVQ 88
>UniRef50_A6YE90 Cluster: Ribosomal protein S11; n=5; cellular
organisms|Rep: Ribosomal protein S11 - Chlorokybus
atmophyticus (Soil alga)
Length = 262
Score = 42.7 bits (96), Expect = 0.012
Identities = 26/75 (34%), Positives = 37/75 (49%)
Frame = +3
Query: 192 GATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAE 371
G GVA + N T + +TDL G +G + K R + S YAA AA+ A+
Sbjct: 147 GVQRLGVAHIQTTLNNTIITITDLDGNTKSWSSSGSIGFKGSRRKTS-YAAQAAAETAAK 205
Query: 372 KCKTLGITALHIKLR 416
K LGI + +K+R
Sbjct: 206 KSIQLGIKDVTVKIR 220
>UniRef50_A6PT07 Cluster: Ribosomal protein S11; n=1; Victivallis
vadensis ATCC BAA-548|Rep: Ribosomal protein S11 -
Victivallis vadensis ATCC BAA-548
Length = 148
Score = 41.9 bits (94), Expect = 0.021
Identities = 28/106 (26%), Positives = 45/106 (42%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A A+FN T V TDL G I TGG +++ YAA + A D A+K + +
Sbjct: 38 GIAYVLATFNNTKVTFTDLHGN-VICWSTGGKNGFKGSRKSTAYAAQVIAGDAAKKAQLV 96
Query: 387 GITALHIKLRAXXXXXXXXXXXXAQSALRALGSFKYEDWPH*RCHP 524
G+ + ++++ A + + PH C P
Sbjct: 97 GMKEVEVRIKGPGAGRESAVRGIAAAGMEISTIKDITPVPHNGCRP 142
>UniRef50_P59378 Cluster: 30S ribosomal protein S11; n=48;
Bacteria|Rep: 30S ribosomal protein S11 - Streptococcus
mutans
Length = 127
Score = 41.5 bits (93), Expect = 0.027
Identities = 20/70 (28%), Positives = 38/70 (54%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A A+FN T V +TD+ G G + K R +++P+AA +AA+ A+ +
Sbjct: 17 GIAHIHATFNNTIVMITDVHGNALAWSSAGALGFKGSR-KSTPFAAQMAAEAAAKSAQEH 75
Query: 387 GITALHIKLR 416
G+ + + ++
Sbjct: 76 GLKTVEVTVK 85
>UniRef50_O59305 Cluster: Putative uncharacterized protein PH1639;
n=1; Pyrococcus horikoshii|Rep: Putative uncharacterized
protein PH1639 - Pyrococcus horikoshii
Length = 102
Score = 40.7 bits (91), Expect = 0.048
Identities = 24/79 (30%), Positives = 34/79 (43%)
Frame = -1
Query: 482 AKSPKCRLSTRTRGLCFVSTSSTELYVQGRYAKSFAFLCYILCRQHSSVG*RFITVSLHL 303
++ P C L T R F S+ V + F C +H +G R I VS +
Sbjct: 18 SQGPNCSLCTWPRSFAFASSWGPHPNVNTDNSLFQCFFCCSPSSKHCCIGGRLIPVSFNY 77
Query: 302 HATSDTGDSFPAG*ISNMN 246
H T+ + F G ISN+N
Sbjct: 78 HTTAPSAYRFRTGDISNVN 96
>UniRef50_Q12G79 Cluster: 30S ribosomal protein S11; n=186; cellular
organisms|Rep: 30S ribosomal protein S11 - Polaromonas
sp. (strain JS666 / ATCC BAA-500)
Length = 134
Score = 40.7 bits (91), Expect = 0.048
Identities = 26/107 (24%), Positives = 43/107 (40%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A ASFN T + +TD G +GG K R +++P+AA +A++
Sbjct: 24 GIAHVHASFNNTIITITDRQGNALSWASSGGQGFKGSR-KSTPFAAQVASEVAGRAAIEQ 82
Query: 387 GITALHIKLRAXXXXXXXXXXXXAQSALRALGSFKYEDWPH*RCHPR 527
GI L ++++ +R PH C P+
Sbjct: 83 GIKNLDVEIKGPGPGRESSVRALGALGIRINSIADVTPVPHNGCRPQ 129
>UniRef50_P59375 Cluster: 30S ribosomal protein S11; n=85; cellular
organisms|Rep: 30S ribosomal protein S11 - Shewanella
oneidensis
Length = 130
Score = 39.5 bits (88), Expect = 0.11
Identities = 27/97 (27%), Positives = 46/97 (47%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A ASFN T V +TD G +GG + R +++P+AA +AA+ +
Sbjct: 20 GMAHIHASFNNTIVTITDRQGNALSWATSGGSGFRGSR-KSTPFAAQVAAERAGAAAQDY 78
Query: 387 GITALHIKLRAXXXXXXXXXXXXAQSALRALGSFKYE 497
G+ L + ++ +SA+RAL + Y+
Sbjct: 79 GLKNLEVFVKG--------PGPGRESAIRALNAVGYK 107
>UniRef50_Q0P3I7 Cluster: Rps11; n=1; Ostreococcus tauri|Rep: Rps11
- Ostreococcus tauri
Length = 121
Score = 38.7 bits (86), Expect = 0.19
Identities = 22/63 (34%), Positives = 32/63 (50%)
Frame = +3
Query: 228 SFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHI 407
+ N TFV++TDL G +G + K + ++S YAA + V + C I L I
Sbjct: 18 TLNNTFVNLTDLEGNTLCCVSSGSLGFKGSK-KSSSYAAQSTTEKVLQFCAQQSIEKLMI 76
Query: 408 KLR 416
KLR
Sbjct: 77 KLR 79
>UniRef50_Q6ASY6 Cluster: Small subunit ribosomal protein, putative;
n=19; Spermatophyta|Rep: Small subunit ribosomal
protein, putative - Oryza sativa subsp. japonica (Rice)
Length = 366
Score = 37.5 bits (83), Expect = 0.44
Identities = 18/61 (29%), Positives = 32/61 (52%)
Frame = +3
Query: 234 NXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 413
N TFV VTD+ G + G ++ + R S YAA A+ V + +G+ ++ +K+
Sbjct: 254 NKTFVTVTDVRGNKKTGASAGCLEDRKGRSRLSKYAAEATAEHVGRAARKMGLKSVVMKV 313
Query: 414 R 416
+
Sbjct: 314 K 314
>UniRef50_P04969 Cluster: 30S ribosomal protein S11; n=155; cellular
organisms|Rep: 30S ribosomal protein S11 - Bacillus
subtilis
Length = 131
Score = 37.1 bits (82), Expect = 0.59
Identities = 24/106 (22%), Positives = 42/106 (39%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
G+A ++FN T V +TD G G + + R +++P+AA +AA+ A+
Sbjct: 21 GIAHIRSTFNNTIVTITDTHGNAISWSSAGALGFRGSR-KSTPFAAQMAAETAAKGSIEH 79
Query: 387 GITALHIKLRAXXXXXXXXXXXXAQSALRALGSFKYEDWPH*RCHP 524
G+ L + ++ + L PH C P
Sbjct: 80 GLKTLEVTVKGPGSGREAAIRALQAAGLEVTAIRDVTPVPHNGCRP 125
>UniRef50_Q98Q07 Cluster: 30S ribosomal protein S11; n=33;
Bacteria|Rep: 30S ribosomal protein S11 - Mycoplasma
pulmonis
Length = 136
Score = 35.5 bits (78), Expect = 1.8
Identities = 22/70 (31%), Positives = 37/70 (52%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
GVA ++ N T V +D G +G + K + + + YAA LAAQ+ +EK K
Sbjct: 21 GVAHIHSTHNNTIVTFSDEKGNVISWASSGTIGYKGTKKKTA-YAAGLAAQNASEKAKEH 79
Query: 387 GITALHIKLR 416
GI + ++++
Sbjct: 80 GIREVSVRVK 89
>UniRef50_A0NHE9 Cluster: Ribosomal protein S11; n=1; Oenococcus
oeni ATCC BAA-1163|Rep: Ribosomal protein S11 -
Oenococcus oeni ATCC BAA-1163
Length = 113
Score = 35.1 bits (77), Expect = 2.4
Identities = 20/70 (28%), Positives = 36/70 (51%)
Frame = +3
Query: 207 GVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTL 386
GVA ++FN T V +TD +G G + K R +++P+AA LA + A+
Sbjct: 22 GVAHIHSTFNNTIVLITDEAGNAVSWSSAGSLGFKGSR-KSTPFAAQLAGEAAAKAAMEQ 80
Query: 387 GITALHIKLR 416
+ ++ I ++
Sbjct: 81 NMHSVAISVK 90
>UniRef50_Q7YDI4 Cluster: Small subunit ribosomal protein; n=29;
Magnoliophyta|Rep: Small subunit ribosomal protein -
Berberis thunbergii (Japanese barberry)
Length = 150
Score = 34.7 bits (76), Expect = 3.1
Identities = 18/61 (29%), Positives = 29/61 (47%)
Frame = +3
Query: 234 NXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCKTLGITALHIKL 413
N TFV VTD G + G ++ S YAA A+ V + LG+ ++ +K+
Sbjct: 54 NNTFVTVTDARGNKKTGASAGSLEEFKGGSRLSRYAAKATAEHVGRSARNLGMKSVVMKV 113
Query: 414 R 416
+
Sbjct: 114 K 114
>UniRef50_Q9XTP8 Cluster: 205 kDa Pk1(B+)1+ SICAvar antigen; n=1;
Plasmodium knowlesi|Rep: 205 kDa Pk1(B+)1+ SICAvar
antigen - Plasmodium knowlesi
Length = 1759
Score = 34.3 bits (75), Expect = 4.1
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = +2
Query: 353 GTGCSREMQNSWHNGLAHKAPCYWWKQNKDPWSWCSVCTSGS 478
GT NS NG H PC+W K +K W C + TSGS
Sbjct: 212 GTKPGTSCHNS--NGKEHCVPCHWDKDDK--WKDCKITTSGS 249
>UniRef50_Q2GEB7 Cluster: 30S ribosomal protein S11; n=1;
Neorickettsia sennetsu str. Miyayama|Rep: 30S ribosomal
protein S11 - Neorickettsia sennetsu (strain Miyayama)
Length = 120
Score = 33.5 bits (73), Expect = 7.2
Identities = 20/71 (28%), Positives = 35/71 (49%)
Frame = +3
Query: 201 VFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAMLAAQDVAEKCK 380
V G A +FN ++ VTD G +G + K ++ +++ YAA A + K K
Sbjct: 8 VSGNAHVIVTFNNVYISVTDHQGNVQGWASSGSVGFKGNK-KSTAYAAQSVATTLMTKLK 66
Query: 381 TLGITALHIKL 413
+G+ L++ L
Sbjct: 67 RIGLKILNVHL 77
>UniRef50_P03087 Cluster: Capsid protein VP1; n=1927;
Polyomavirus|Rep: Capsid protein VP1 - Simian virus 40
(SV40)
Length = 364
Score = 33.1 bits (72), Expect = 9.6
Identities = 14/18 (77%), Positives = 14/18 (77%)
Frame = +2
Query: 713 DPXMIRYIDEFGQTXXXM 766
DP MIRYIDEFGQT M
Sbjct: 346 DPDMIRYIDEFGQTTTRM 363
Database: uniref50
Posted date: Oct 5, 2007 11:19 AM
Number of letters in database: 575,637,011
Number of sequences in database: 1,657,284
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 568,141,661
Number of Sequences: 1657284
Number of extensions: 8943124
Number of successful extensions: 16934
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 16524
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 16921
length of database: 575,637,011
effective HSP length: 100
effective length of database: 409,908,611
effective search space used: 78702453312
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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