Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B03
         (878 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein S14|Sc...   140   2e-34
SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein S14|Schizosa...   140   2e-34
SPCC417.08 |tef3||translation elongation factor eEF3|Schizosacch...    28   2.0  

>SPAC3H5.05c |rps1401|rps14-1, rps14|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 139

 Score =  140 bits (340), Expect = 2e-34
 Identities = 70/103 (67%), Positives = 78/103 (75%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           +GPQ   G  VFGVA  FASFN TFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           AAQD A KCK +GITALHIK+RA            AQ+ALRAL
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRAL 107



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 481 ARSSMKIGRIEDVTP 525
           AR+ M+IGRIEDVTP
Sbjct: 108 ARAGMRIGRIEDVTP 122


>SPBC18H10.13 |rps1402|rps14-2|40S ribosomal protein
           S14|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 139

 Score =  140 bits (340), Expect = 2e-34
 Identities = 70/103 (67%), Positives = 78/103 (75%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           +GPQ   G  VFGVA  FASFN TFVH+TDL+G+ETI RVTGGMKVK DRDE+SPYAAML
Sbjct: 5   VGPQIRSGELVFGVAHIFASFNDTFVHITDLTGKETIVRVTGGMKVKTDRDESSPYAAML 64

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           AAQD A KCK +GITALHIK+RA            AQ+ALRAL
Sbjct: 65  AAQDAAAKCKEVGITALHIKIRATGGTATKTPGPGAQAALRAL 107



 Score = 29.5 bits (63), Expect = 0.66
 Identities = 12/15 (80%), Positives = 14/15 (93%)
 Frame = +1

Query: 481 ARSSMKIGRIEDVTP 525
           AR+ M+IGRIEDVTP
Sbjct: 108 ARAGMRIGRIEDVTP 122


>SPCC417.08 |tef3||translation elongation factor
           eEF3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1047

 Score = 27.9 bits (59), Expect = 2.0
 Identities = 14/34 (41%), Positives = 20/34 (58%)
 Frame = +3

Query: 273 ETIARVTGGMKVKADRDEASPYAAMLAAQDVAEK 374
           ET+  V G +KV  + +  + Y A +AAQ V EK
Sbjct: 347 ETLKAVLGEIKVPTNEEVIAKYVANIAAQLVEEK 380


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,323,012
Number of Sequences: 5004
Number of extensions: 35595
Number of successful extensions: 69
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 66
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 440481800
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)