Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B03
         (878 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0871 - 20441689-20441756,20442220-20442349,20442422-204425...   145   4e-35
02_04_0100 - 19730137-19730237,19731215-19731344,19731419-197315...   145   4e-35
02_01_0469 - 3359156-3359500,3359595-3359680,3359766-3359811,335...   145   4e-35
02_01_0045 + 307058-307552,308670-308716,308779-308866,309664-30...    50   2e-06
01_07_0327 + 42752697-42752711,42753937-42754127,42754822-427549...    29   3.7  

>04_03_0871 -
           20441689-20441756,20442220-20442349,20442422-20442507,
           20444271-20444316,20444425-20444547,20445302-20445370
          Length = 173

 Score =  145 bits (352), Expect = 4e-35
 Identities = 73/103 (70%), Positives = 80/103 (77%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           LGP    G  VFGVA  FASFN TF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAML
Sbjct: 39  LGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAML 98

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           A+QDVA++CK LGITALHIKLRA            AQSALRAL
Sbjct: 99  ASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 141



 Score = 31.9 bits (69), Expect = 0.70
 Identities = 14/15 (93%), Positives = 14/15 (93%)
 Frame = +1

Query: 481 ARSSMKIGRIEDVTP 525
           ARS MKIGRIEDVTP
Sbjct: 142 ARSGMKIGRIEDVTP 156


>02_04_0100 -
           19730137-19730237,19731215-19731344,19731419-19731504,
           19732410-19732455,19732558-19732680,19732779-19732781
          Length = 162

 Score =  145 bits (352), Expect = 4e-35
 Identities = 73/103 (70%), Positives = 80/103 (77%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           LGP    G  VFGVA  FASFN TF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAML
Sbjct: 17  LGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAML 76

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           A+QDVA++CK LGITALHIKLRA            AQSALRAL
Sbjct: 77  ASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 119


>02_01_0469 -
           3359156-3359500,3359595-3359680,3359766-3359811,
           3359897-3360016,3360622-3360624
          Length = 199

 Score =  145 bits (352), Expect = 4e-35
 Identities = 73/103 (70%), Positives = 80/103 (77%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           LGP    G  VFGVA  FASFN TF+HVTDLSGRET+ R+TGGMKVKADRDE+SPYAAML
Sbjct: 16  LGPTVREGEYVFGVAHIFASFNDTFIHVTDLSGRETLVRITGGMKVKADRDESSPYAAML 75

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           A+QDVA++CK LGITALHIKLRA            AQSALRAL
Sbjct: 76  ASQDVAQRCKELGITALHIKLRATGGNKTKTPGPGAQSALRAL 118


>02_01_0045 +
           307058-307552,308670-308716,308779-308866,309664-309756,
           309788-309950,310554-310627,310889-310927
          Length = 332

 Score = 50.4 bits (115), Expect = 2e-06
 Identities = 37/73 (50%), Positives = 40/73 (54%), Gaps = 9/73 (12%)
 Frame = +3

Query: 288 VTGGMKVKADRDEASPYAAMLAAQDVAEKCK------TLGITALH---IKLRAXXXXXXX 440
           V GGMK+KAD DE+SPYAAML +QDVA  CK       LG   L    I L A       
Sbjct: 211 VGGGMKIKADCDESSPYAAMLVSQDVALCCKYRTNGQILGDCFLEFCLIMLCAAGGNKTN 270

Query: 441 XXXXXAQSALRAL 479
                AQSALRAL
Sbjct: 271 TPGPDAQSALRAL 283



 Score = 29.5 bits (63), Expect = 3.7
 Identities = 11/27 (40%), Positives = 18/27 (66%)
 Frame = +3

Query: 288 VTGGMKVKADRDEASPYAAMLAAQDVA 368
           V GGM +K+D DE SP+ + +   D++
Sbjct: 166 VGGGMNIKSDCDEPSPHCSCVGQTDIS 192


>01_07_0327 +
           42752697-42752711,42753937-42754127,42754822-42754919,
           42755792-42755880
          Length = 130

 Score = 29.5 bits (63), Expect = 3.7
 Identities = 18/70 (25%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
 Frame = -1

Query: 545 GSSLMVXGVTSSMRPIFILERAKSPK-CRLSTRTRGLCFVSTSSTELYVQGRYAKSFAFL 369
           G ++   G    M+ + +L  A SP   +L  R R        +  + ++G+Y  S+   
Sbjct: 15  GGTVSANGKFDEMK-VGVLVFASSPTWAQLCDRVRSKMEHVVPTNVMRMEGQYVASWLIA 73

Query: 368 CYILCRQHSS 339
           CY  C  HS+
Sbjct: 74  CYCTCSHHST 83


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,746,859
Number of Sequences: 37544
Number of extensions: 265672
Number of successful extensions: 584
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 571
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 583
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2479731924
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)