Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B03
         (878 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal prote...   148   6e-36

>U00033-5|AAC48301.1|  152|Caenorhabditis elegans Ribosomal protein,
           small subunitprotein 14 protein.
          Length = 152

 Score =  148 bits (358), Expect = 6e-36
 Identities = 74/103 (71%), Positives = 80/103 (77%)
 Frame = +3

Query: 171 LGPQHLVGATVFGVAPXFASFNXTFVHVTDLSGRETIARVTGGMKVKADRDEASPYAAML 350
           LGPQ   G  +FGVA  FASFN TFVH+TD+SGRETI RVTGGMKVKADRDE+SPYAAML
Sbjct: 18  LGPQAKEGELIFGVAHIFASFNDTFVHITDISGRETIVRVTGGMKVKADRDESSPYAAML 77

Query: 351 AAQDVAEKCKTLGITALHIKLRAXXXXXXXXXXXXAQSALRAL 479
           AAQDVA++CK LGI ALHIKLRA            AQSALRAL
Sbjct: 78  AAQDVADRCKQLGINALHIKLRATGGTRTKTPGPGAQSALRAL 120



 Score = 30.7 bits (66), Expect = 1.4
 Identities = 13/15 (86%), Positives = 14/15 (93%)
 Frame = +1

Query: 481 ARSSMKIGRIEDVTP 525
           AR+ MKIGRIEDVTP
Sbjct: 121 ARAGMKIGRIEDVTP 135


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,183,718
Number of Sequences: 27780
Number of extensions: 216533
Number of successful extensions: 400
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 377
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 399
length of database: 12,740,198
effective HSP length: 81
effective length of database: 10,490,018
effective search space used: 2213393798
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)