Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_B01
         (841 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_1157 - 24419157-24419948                                         33   0.28 
01_06_0823 + 32234588-32234936,32236354-32237093,32237260-322373...    33   0.37 
07_01_0311 - 2211824-2212410,2213275-2213290                           30   2.6  
03_06_0348 - 33299824-33300234                                         30   2.6  
04_03_0904 + 20717005-20718087                                         28   8.1  

>07_03_1157 - 24419157-24419948
          Length = 263

 Score = 33.1 bits (72), Expect = 0.28
 Identities = 24/72 (33%), Positives = 28/72 (38%), Gaps = 5/72 (6%)
 Frame = -1

Query: 427 QXPHXYXPXLDXHRSXYXP--PAGPRTLVP*AXPVNLPRXXLKSAXX*PALPK---SPAX 263
           + PH   P L  H     P  P  P+  VP A    LP+  L      P LPK    P  
Sbjct: 153 EIPHPAVPELPKHEEPPHPVVPELPKPEVPHAAVPELPKPELPPHPAVPELPKHEEPPHP 212

Query: 262 FXPSVPKTGPPP 227
             P +PK   PP
Sbjct: 213 VVPELPKHEEPP 224


>01_06_0823 +
           32234588-32234936,32236354-32237093,32237260-32237343,
           32237909-32239263,32240399-32240460,32240544-32241144,
           32241229-32241310,32241778-32241840
          Length = 1111

 Score = 32.7 bits (71), Expect = 0.37
 Identities = 20/49 (40%), Positives = 21/49 (42%)
 Frame = -1

Query: 373 PPAGPRTLVP*AXPVNLPRXXLKSAXX*PALPKSPAXFXPSVPKTGPPP 227
           PP   R LV    P   P     SA   PA P+SP    P VP   PPP
Sbjct: 7   PPPKKRRLVEVHVPSPAPSPSSSSAPA-PASPRSPVPPPPGVPPPPPPP 54


>07_01_0311 - 2211824-2212410,2213275-2213290
          Length = 200

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 20/56 (35%), Positives = 24/56 (42%)
 Frame = +3

Query: 225 VGGGPVFGTLGXNXAGLFGKAGYXXALFNXXRGKLTGXAYGTRVLGPAGGXYXLRW 392
           +GG  VFGT+G   AG+ G      A      G +T    GT     AGG    RW
Sbjct: 113 MGGNAVFGTIG--TAGIGGSVAAGTAGMAGIGGNVTAGTVGTGT--AAGGVASARW 164


>03_06_0348 - 33299824-33300234
          Length = 136

 Score = 29.9 bits (64), Expect = 2.6
 Identities = 18/50 (36%), Positives = 23/50 (46%)
 Frame = +3

Query: 225 VGGGPVFGTLGXNXAGLFGKAGYXXALFNXXRGKLTGXAYGTRVLGPAGG 374
           +G  P F  +G    G FG  G   A+F+   G L G   G   +GP GG
Sbjct: 66  MGDLPGFPAVGGGYGGGFGNNG--GAVFSGVTGPLGGVGGGMGSVGPVGG 113


>04_03_0904 + 20717005-20718087
          Length = 360

 Score = 28.3 bits (60), Expect = 8.1
 Identities = 25/90 (27%), Positives = 31/90 (34%), Gaps = 3/90 (3%)
 Frame = -1

Query: 421 PHXYXPXLDXHRSXYXPPAGPRTLVP*AXPVNLPRXXLKSAXX*PALPKS--PAXFXPSV 248
           P  Y P      + Y P   P +  P   P   P     +       PK   P  + P  
Sbjct: 175 PPSYKPQPKPTPTPYTPTPTPPSYKPQPKPTPTPYTPTPTPPSYKPQPKPNPPPTYKPQ- 233

Query: 247 PKTGPPPT-XXAQVTARGXRXENXPXTGEP 161
           PK  PPPT   A  T +     N P T +P
Sbjct: 234 PKPNPPPTYKPAPPTYKPQPKPNPPPTYKP 263


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,824,263
Number of Sequences: 37544
Number of extensions: 220420
Number of successful extensions: 437
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 403
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 431
length of database: 14,793,348
effective HSP length: 81
effective length of database: 11,752,284
effective search space used: 2326952232
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)