Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= MFBP09_F_A23
         (891 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor 1|Sch...    37   0.003
SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomy...    37   0.004

>SPAC1039.10 |mmf2|hpm1, SPAC922.01|homologous Pmf1p factor
           1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 126

 Score = 37.1 bits (82), Expect = 0.003
 Identities = 24/98 (24%), Positives = 35/98 (35%)
 Frame = +1

Query: 184 GPYXXAXLAXXXLYXSGXLGLDRXAXXVCGGAEAXXRQALDXLRHVLEAGGXXXXXXXXX 363
           GPY  A  +   ++ SG   + +    V G  +   R  ++ L  VL   G         
Sbjct: 15  GPYNQAVKSGGLIFCSGQAAV-KDGNFVPGTIQEQTRLTIENLAEVLRVAGSSLEKLVKV 73

Query: 364 XXXXXXXXXFQTFNKVYAXYFPKACPARMTYEVXRLPL 477
                    F   N+VY    P   PAR T    ++PL
Sbjct: 74  NIFLTDIDDFAAMNEVYKEMLPDPMPARTTVAAGKIPL 111


>SPBC2G2.04c |mmf1|pmf1|YjgF family protein Mmf1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 162

 Score = 36.7 bits (81), Expect = 0.004
 Identities = 31/110 (28%), Positives = 38/110 (34%)
 Frame = +1

Query: 148 TXXXSPEXYQPVGPYXXAXLAXXXLYXSGXLGLDRXAXXVCGGAEAXXRQALDXLRHVLE 327
           T   SP+     GPY  A  A   +Y SG + +      + G      RQ L  L+ VL 
Sbjct: 40  TPINSPKL-SSAGPYNQAIKANGVIYCSGQIPVAN-GKVIEGTVGDQTRQCLLNLQEVLT 97

Query: 328 AGGXXXXXXXXXXXXXXXXXXFQTFNKVYAXYFPKACPARMTYEVXRLPL 477
             G                  F   NKVY    P   PAR    V  +PL
Sbjct: 98  EAGSSLNKIVKVNIFLADMDDFAAVNKVYTEVLPDPKPARSCVAVKTVPL 147


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,620,428
Number of Sequences: 5004
Number of extensions: 16649
Number of successful extensions: 21
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 21
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 21
length of database: 2,362,478
effective HSP length: 72
effective length of database: 2,002,190
effective search space used: 448490560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)